Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal9g1598 ATGATATGTTCAAATAATGATCCTAATGTTAGGCCTAGCATGAGACAAATTGTGAGGTATTTGGATGGAGAAGTTGAGTTACCACATGACTTTAGAAAGCCACAAGATTTAAGCCACAATGAAGGGTTTGATGAATTTTTGCACTCACTTGCACTTTCTTCCTTTGATAAGATGAGTTGTAATTCATATCCTTCTTTTGGTTATTCACCCCAATCACTTCTTCATGCTAGAGGAGAAACTAGCGGTGACCGATCGCCGTTCAACCCCGTGATCGTCCTCCGCAACGGAAACGACGTCGTTTCATCTTCCTCAGAAAGACGCAGCTTCGAACTCTATTACAACGACGTCGTTTCCGGATCAGGTCTTCGTCCATTACCCGCTACCGTAACCGAGTTTTTAATGGGTTCAGGGTTCGACCATATCCTGAACCAGCTCACTTATTTAGAAGGAACACCGGTTCAATTATCGGACCGGTCTTTTTACCCGATAGCGGCATCGAAAACCGCTATCGAGTCAATGCCAGTTGTTAAAATAATTCCAACACATGTGAAAGCCGAATCGCAATGTGTCGTTTGCATGGAACCTTTCGAGCTCGATTGCGATGCTCGAGAGATGCCATGCGGCCACATTTACCACTCCGGCTGCATCCTCCCTTGGCTATCAGTGCGGAACTCGTGCCCTGTGTGTAGGCATGAGCTCCCTACCGAGGGAACAGGGGAGGATGCTGCGGGGTTGATCATATGGAGACTCCCTGGAGGAGGGTTTGCTGTGGGGAGGTTCATTGGTGGTGTTGGTGGAGAACTTCCTGTTGTGTATACTGAATTGGATGGTGGGTTTAATGGTATTGTAGGTGGTGCTGATGTTGTTTCTAGTAGGATCTCATGGGAGTCTAGTTTGGGTAGAAGAAGATCAAGGGAGAGAAGAGGATTTGGCGGTGTATTGCGCAGCGTTTTCTCGTATGTTCGGAGAGTTAGGAGTTCAGTTTCGAGTAATTTGGGGATTGGTGAAAGATCTAGGTCTAGCACTGTGCTCTCTAGATTGTCAAGGAGGGGCAGTTAG 1059 0.4684 MICSNNDPNVRPSMRQIVRYLDGEVELPHDFRKPQDLSHNEGFDEFLHSLALSSFDKMSCNSYPSFGYSPQSLLHARGETSGDRSPFNPVIVLRNGNDVVSSSSERRSFELYYNDVVSGSGLRPLPATVTEFLMGSGFDHILNQLTYLEGTPVQLSDRSFYPIAASKTAIESMPVVKIIPTHVKAESQCVVCMEPFELDCDAREMPCGHIYHSGCILPWLSVRNSCPVCRHELPTEGTGEDAAGLIIWRLPGGGFAVGRFIGGVGGELPVVYTELDGGFNGIVGGADVVSSRISWESSLGRRRSRERRGFGGVLRSVFSYVRRVRSSVSSNLGIGERSRSSTVLSRLSRRGS 352
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal9g1598 352 ProSiteProfiles Zinc finger RING-type profile. 189 230 IPR001841 -
Lal9g1598 352 SUPERFAMILY RING/U-box 169 235 - -
Lal9g1598 352 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 156 236 IPR013083 -
Lal9g1598 352 SMART ring_2 189 229 IPR001841 -
Lal9g1598 352 CDD RING-H2_RNF181 188 233 - -
Lal9g1598 352 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RHC2A-RELATED 76 309 - -
Lal9g1598 352 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 76 309 - -
Lal9g1598 352 Pfam Protein of unknown function (DUF1117) 244 337 IPR010543 -
Lal9g1598 352 Pfam Ring finger domain 188 230 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal9g1598 Lal-Chr9 18344011 18346264 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal9g1598 124 236 C3H Transcription Factor Family AT5G01980 41.593 1.50e-21 93.6
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal9g1598 9 18344011 18346264 Lal6g0275 6 1798817 1801603 ECH
Lal9g1598 9 18344011 18346264 Lal18g1330 18 15777268 15778605 ECH
Lal9g1598 9 18344011 18346264 Lal22g0267 22 1686911 1688029 ECH
Lal9g1598 9 18344011 18346264 Lal5g1173 5 14446319 14447485 ECH
Lal9g1598 9 18344011 18346264 Lal3g0543 3 4044815 4045978 ECH
Lal9g1598 9 18344011 18346264 Lal11g0621 11 5204776 5206629 ECH
Lal9g1598 9 18344011 18346264 Lal9g1598 9 18344011 18346264 ECH