Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal9g1591 ATGATTTTGGACACCCATTTTCTGCTGTGGGATTTGCACTTTGGAATGAAGGATAGGCAACGGTGGCGAGCTGAAGAGGATGCTTTATTATGTGCTTATGTCAAACAGTATGGTCCTAGAGAATGGAATCTTGTGTCTCAGCGCATGAACACGCCTCTTAATCGGGATGCCAAGTCATGCTTAGAAAGGTGGAAGAATTACCTCAAGCCTGGTATTAAGAAAGGATCTCTTACCGAGGAAGAGCAGCATCTTGTCATCCATCTTCAAGCAAAACACGGAAACAAATGGAAAAAAATTGCTGCTGAAGTCCCAGGTCGAACTGCTAAAAGGTTAGGGAAGTGGTGGGAAGTATTCAAAGAGAAGCAGCAAAGAGAAACAAAGGTGATTGATAGAACCGTCGACCCGATAAACAATAGCAAATACGAGCACATATTAGAGAGTTTTGCCGAGAAACTAGTGAACGAGCGCCCTTCGCCATCGTATGTTATGGCCTCTTCTAATGGTTCTTTTATACATACCGATGCAGCAGTGACTGCACCAGCAATGCTTCCTTCTTGGCTTTCGATTTCCAATTCTAATAACACTGCGCCTGTTAGGCCACCTTCACCCTCCGTGACACTAAGTCTTTCTCCCTCAGTAGTGGCTGCACCTCCTCCTTGGATGCAAACCGTAAGAGGACCCGACAATGGTCCTCTTGTTATGGGGAACGTAACACCTCACGGGTCTGTTTTAGCAGCCTATGGTGATAACATGCTTATGTCTGAGTTAGTGGAGTGCTCTAAAGAGTTGGAGGAAGTGCATCATGCTTTAGCTGCACATAAGAAGGAAACATCATGGCGATTAAGCCGGGTAGAGTTGCAGCTGGAGTCAGAAAAATCGAGTCGAAGAAGAGAGAAGATGGAAGAAATCGAAGCGAAGATTAAAGCTCTTAGGGACGAGCAGGCGACTGCTTTGGACAGAATTGAAATCGAATACAGGGAACAGTTGGCAGTGTTGAGAAGAGATGCAGAAACAAAGGAGCAGAAACTGACCGAGCAATGGGCTGCGAAGCACTCGCGACTTACGAAGTTTCTAGAGCAGGTAGGATGCAGGTCAAGGCTTGCTGAGCCAAATGGGAGATAG 1122 0.4608 MILDTHFLLWDLHFGMKDRQRWRAEEDALLCAYVKQYGPREWNLVSQRMNTPLNRDAKSCLERWKNYLKPGIKKGSLTEEEQHLVIHLQAKHGNKWKKIAAEVPGRTAKRLGKWWEVFKEKQQRETKVIDRTVDPINNSKYEHILESFAEKLVNERPSPSYVMASSNGSFIHTDAAVTAPAMLPSWLSISNSNNTAPVRPPSPSVTLSLSPSVVAAPPPWMQTVRGPDNGPLVMGNVTPHGSVLAAYGDNMLMSELVECSKELEEVHHALAAHKKETSWRLSRVELQLESEKSSRRREKMEEIEAKIKALRDEQATALDRIEIEYREQLAVLRRDAETKEQKLTEQWAAKHSRLTKFLEQVGCRSRLAEPNGR 373
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal9g1591 373 SMART sant 18 70 IPR001005 -
Lal9g1591 373 SMART sant 73 121 IPR001005 -
Lal9g1591 373 Pfam Myb-like DNA-binding domain 22 83 - -
Lal9g1591 373 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 69 123 IPR017930 -
Lal9g1591 373 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 19 68 IPR017930 -
Lal9g1591 373 Coils Coil 293 320 - -
Lal9g1591 373 SUPERFAMILY Homeodomain-like 19 113 IPR009057 -
Lal9g1591 373 CDD SANT 21 68 IPR001005 -
Lal9g1591 373 Gene3D - 19 73 - -
Lal9g1591 373 Gene3D - 77 142 - -
Lal9g1591 373 ProSiteProfiles Myb-like domain profile. 19 68 IPR001005 -
Lal9g1591 373 PANTHER PROTEIN ROUGH SHEATH 2 HOMOLOG 16 373 - -
Lal9g1591 373 Coils Coil 322 346 - -
Lal9g1591 373 CDD SANT 78 119 IPR001005 -
Lal9g1591 373 PANTHER TRANSCRIPTION FACTOR AS1 16 373 IPR031055 GO:0005634|GO:0006351|GO:0010338
Lal9g1591 373 ProSiteProfiles Myb-like domain profile. 69 119 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal9g1591 Lal-Chr9 18274012 18277158 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal9g1591 16 364 MYB Transcription Factor Family AT2G37630 64.130 3.54e-153 434
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Lal9g1591 Myb_DNA-bind_6 8.3e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal9g1591 K09422 - gmx:100819082 548.895
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal9g1591 9 18274012 18277158 Lal9g1591 9 18274012 18277158 ECH