Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal9g1573 ATGAAGTTTCACTCTCATCTACGATCCTTCGCTTTCATCATTCTCGTTATGGCGCTACTTTTAACTGTTGCCAACTCATTCAACCACAACCACAATCAAATTCACAAAGAGAAAGGAACAAGGGGTTATATCGTAGGAGAAGCGAAGTTGGAGAATTCATCAATGGCGGTAACGGAAAGGTTAGGTGATGCTTTGAATCAGAATGCAGTAGTTCCAGATGAGATAGCTTCTATGGTTGACATGACCATCCACAATTACACAAAGAGAAGGAATTTGAATTTCTTCTCATGCGGGACAGGGAATCCCATTGATGACTGCTGGCGCTGTGACAAGCTTTGGTACCGCCACCGAAAGCGCTTAGCCGATTGCGCCATTGGTTTTGGACACAACTCCGTTGGTGGTCGTGACGGAAGGTATTACGTTGTCACTGACCCAAGTGACACCGATGCTGTAAACCCCAAACAAGGAACCCTACGGCATGGTGTCATTCAAGACAGGCCCTTATGGATAGTGTTCAAGAGGGACATGGTGATCACATTAAAGCAAGAACTGATCATGAACAGTTTCAAGACCATTGATGCTCGTGGCTTCAACATCCACATTGCTCATGGAGCTTGCATTACTATCCAATACATCACCAACATCATCATTCATGGCCTCAATATTCATGATTGCATTCAAACTGGGAATGCTATGGTTCGTAGTTCACCTTCTCATTTTGGATGGAGAACCATGGCTGATGGTGATGGAATTTCAATCTTTGGTGCAAGTCACATTTGGATTGATCATAACTCACTGTCTAATTGTGCTGATGGACTTATTGATGCTATTATTGGCTCTACTGCTATTACCATTTCAAACAATTATTTCACTAACCACAATGAGGTTATGCTATTGGGTCACAGTGACTCTTATGTTAGAGACAAGTATATGCAAGTGACCGTTGCATACAATCATTTTGGGGAGGGTCTTGTCCAAAGAATGCCAAGGTGCAGACATGGATATTTCCATGTGGTAAACAATGATTATACCCACTGGGAAATGTATGCAATTGGTGGCAGTGCTAATCCCACAATTAACAGCCAAGGCAACAGATATCTTGCCCCTCTCAACATCTTTGCTAAGGAGGTGACAAAGAGGGTGAAAACAGAGGAAAACACATGGAAAAGGTGGAATTGGAGATCTGATGGAGACCTTCTACTGAATGGAGCCTATTTTACTTCATCAGGAGCAAGATCTGCAGCTAGTTATGGCAGAGCCTCAAGTTTGTCAGCAAAATCATCTTCTGTGGTTGGTACCCTTACCTCTGGTGCTGGTGTTCTTAACTGCCGTAGAGGTATCATGTGTTAA 1350 0.4311 MKFHSHLRSFAFIILVMALLLTVANSFNHNHNQIHKEKGTRGYIVGEAKLENSSMAVTERLGDALNQNAVVPDEIASMVDMTIHNYTKRRNLNFFSCGTGNPIDDCWRCDKLWYRHRKRLADCAIGFGHNSVGGRDGRYYVVTDPSDTDAVNPKQGTLRHGVIQDRPLWIVFKRDMVITLKQELIMNSFKTIDARGFNIHIAHGACITIQYITNIIIHGLNIHDCIQTGNAMVRSSPSHFGWRTMADGDGISIFGASHIWIDHNSLSNCADGLIDAIIGSTAITISNNYFTNHNEVMLLGHSDSYVRDKYMQVTVAYNHFGEGLVQRMPRCRHGYFHVVNNDYTHWEMYAIGGSANPTINSQGNRYLAPLNIFAKEVTKRVKTEENTWKRWNWRSDGDLLLNGAYFTSSGARSAASYGRASSLSAKSSSVVGTLTSGAGVLNCRRGIMC 449
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal9g1573 449 PANTHER PECTATE LYASE 18-RELATED 18 446 IPR045032 GO:0030570
Lal9g1573 449 PRINTS Pollen allergen Amb family signature 123 140 IPR018082 -
Lal9g1573 449 PRINTS Pollen allergen Amb family signature 147 172 IPR018082 -
Lal9g1573 449 PRINTS Pollen allergen Amb family signature 183 199 IPR018082 -
Lal9g1573 449 PRINTS Pollen allergen Amb family signature 247 268 IPR018082 -
Lal9g1573 449 PRINTS Pollen allergen Amb family signature 327 346 IPR018082 -
Lal9g1573 449 PRINTS Pollen allergen Amb family signature 349 368 IPR018082 -
Lal9g1573 449 PRINTS Pollen allergen Amb family signature 391 415 IPR018082 -
Lal9g1573 449 PRINTS Pollen allergen Amb family signature 420 443 IPR018082 -
Lal9g1573 449 PANTHER PECTATE LYASE 18 446 - -
Lal9g1573 449 Gene3D - 100 442 IPR012334 -
Lal9g1573 449 Pfam Pectate lyase 210 364 IPR002022 -
Lal9g1573 449 SMART amb_all 175 372 IPR002022 -
Lal9g1573 449 SUPERFAMILY Pectin lyase-like 78 444 IPR011050 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal9g1573 Lal-Chr9 18071330 18077827 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal9g1573 50 449 Polysaccharide Lyase AT4G13710 74.693 0.0 661
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal9g1573 K01728 - gmx:100809277 701.049
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal2g1800 2 20237452 20246325 Lal9g1573 9 18071330 18077827 LSH