Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal9g1564 ATGGAGAATAATTCATTACAAGATCTTAATTTTGTTGATAACAATGAACATGAAGAAATCCCTGAATGCTTTGTTTGCTGTGTTTGTTTGGATCTATTGTACAAGCCGATTGTGCTAGCTTGTGGTCACATGTGCTGTTTCTGGTGTGTCCATAAATCAATGAGTTGTCTCCGCGAGTCTCAGTGCCCATTTTGTCGGAACCAATACTATCACTTTCCAACAATCTGCCAAATGCTTCACTTTATGCTTCTTAAGATCTATCCTGTTGCTTACAAGGGAAGGGAGATTCAAACTCTTGAGGAAGAAAAGAGAACGGGCTTCTACTCCCCTCAATTTGATGCCGATACAGGTCGATCTCAAACTAAATTTGGTCATTCTGGTAGCCCGTCTTCCTCCTCTAATATAAATCTGCTGTCAAACGCATGCAATGTCGGAACTTCCGAATGTGTTGAGCGATTACAGTCCACTGCCCAGGAAGGAGATGAAGGAACCATCTATTTTGAACACTCTTCTTATGGAGCACCTATAGTTATTGGGACCCCTTCTGCTGAAGGAAAACTACTGCCTGAGAATGAGCTTCTTCCACAACAGAAAATATCGGTTGAAGATGTGAAGTGTACTATGTGCAAGCAACTGCTCTTTCATCCTGTTGTTCTTAATTGTGGTCATGTATACTGTGAATCTTGTGTCATCAACCTAGCTGATGAGGATCTTAGATGTCAAGTTTGTCAACTTCCACATCCGAAAGGACTTCCAAAAGTTTGTTTGGGGTTTGATCACTTTTTGGAGGAAACATTTCCTGAAGACTATGCACGGCAAAGAGTTGCTGTTCAACTCAGTAAAACCAAAGCCCTACCTGTTACCTCATCTAATTGTTCATCGGACAATGGTAACAAAGGAGAAAATATAGATTGGTGGTCTGATCCTGACTCAAAAGTTCATATTGGAGTTGGTTGTGATTTTTGCGGGATGTTTCCAATTATTGGTGATAGATATAAATGCAGCAACTGTAAGGAGAAGATGGGTTTTGATCTTTGTAGTGATTGCTATAACACCCGGTCCAAGCTTCCGGGCCGATTTAATCAACAACACACCTCAGAGCACAAGTTCAAGCTTGTACAACCCAATATTATTCGTAACATAATGTTGAGGCTGGTCAATGGACAGTCAGCAGACAATTCTATTGACAGCGAGACTTTCGAAAATCTACAGTTTACGTCGGAAACTTTGTTTGACGAGGGAGAAGATAACCAGAATGATTCCGAAGCTAGCAGTTGA 1278 0.41 MENNSLQDLNFVDNNEHEEIPECFVCCVCLDLLYKPIVLACGHMCCFWCVHKSMSCLRESQCPFCRNQYYHFPTICQMLHFMLLKIYPVAYKGREIQTLEEEKRTGFYSPQFDADTGRSQTKFGHSGSPSSSSNINLLSNACNVGTSECVERLQSTAQEGDEGTIYFEHSSYGAPIVIGTPSAEGKLLPENELLPQQKISVEDVKCTMCKQLLFHPVVLNCGHVYCESCVINLADEDLRCQVCQLPHPKGLPKVCLGFDHFLEETFPEDYARQRVAVQLSKTKALPVTSSNCSSDNGNKGENIDWWSDPDSKVHIGVGCDFCGMFPIIGDRYKCSNCKEKMGFDLCSDCYNTRSKLPGRFNQQHTSEHKFKLVQPNIIRNIMLRLVNGQSADNSIDSETFENLQFTSETLFDEGEDNQNDSEASS 425
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal9g1564 425 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 2 114 IPR013083 -
Lal9g1564 425 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 189 297 IPR013083 -
Lal9g1564 425 ProSiteProfiles Zinc finger RING-type profile. 26 66 IPR001841 -
Lal9g1564 425 CDD RING-HC 26 65 - -
Lal9g1564 425 SUPERFAMILY RING/U-box 308 373 - -
Lal9g1564 425 ProSitePatterns Zinc finger RING-type signature. 221 230 IPR017907 -
Lal9g1564 425 Pfam RING-type zinc-finger 206 230 IPR027370 -
Lal9g1564 425 Gene3D - 307 373 IPR043145 -
Lal9g1564 425 ProSiteProfiles Zinc finger ZZ-type profile. 314 378 IPR000433 GO:0008270
Lal9g1564 425 SMART zz_5 313 362 IPR000433 GO:0008270
Lal9g1564 425 SUPERFAMILY RING/U-box 16 72 - -
Lal9g1564 425 MobiDBLite consensus disorder prediction 109 132 - -
Lal9g1564 425 ProSiteProfiles Zinc finger RING-type profile. 206 244 IPR001841 -
Lal9g1564 425 Pfam Zinc finger, ZZ type 315 354 IPR000433 GO:0008270
Lal9g1564 425 MobiDBLite consensus disorder prediction 112 132 - -
Lal9g1564 425 PANTHER UNCHARACTERIZED 13 421 - -
Lal9g1564 425 SMART ring_2 26 65 IPR001841 -
Lal9g1564 425 SMART ring_2 206 243 IPR001841 -
Lal9g1564 425 SUPERFAMILY RING/U-box 200 247 - -
Lal9g1564 425 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRT1-LIKE 13 421 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal9g1564 Lal-Chr9 17960570 17966633 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal9g1564 24 68 C3H Transcription Factor Family AT2G42030 35.556 5.99e-06 46.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal9g1564 - - gmx:100787174 644.039