Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal9g1535 ATGGATGAAGATTTTGGTATTCCACCAATGGGTGACATGAACGACGATTTCGGTCTCCCCGATGATAACATTTTCAAACTCGGTGAAGAAAAGGAGATCGGAAAACTTGGTCTTAAGAAGAAGCTTCTTAAGGAAGGTCAAGGATGGGATACTCCTGAAGTTGGTGATGAAGTCGAAGTTCACTATACGGGGACTCTACTTGATGGGACTAAGTTCGATTCGAGCCGCGACAGGAATAGCCCTTTTAAGTTCACTCTTGGGCAAGGGCAAGTAATTAAAGGATGGGATGAAGGTATTAAAACCATGAAGAAAGGTGAAAATGCTCTCTTCACAATCCCGCCTGAGCTAGCTTATGGTGAATCTGGTTCCCCTCCAACGATTCCTCCAAATGCGACACTTCAATTTGATGTTGAGTTGCTGTCGTGGACTAGTGTCAAGGACATATGTAAGGATGGTGGTATCTTTAAGAAGATACTCACTGCGGGGGAGAAATGGGAGAATCCCAAGGATCCTGATGAAGTACTAGTGAAGTATGAAGTTCGTCTTGAAGATGGAAAGCTTGTAGCAAAGTTTGATGGGGTGGAGTTCACTGTCGGAGAGGGTCATTATTGTCCTGCATTGTCAAAGGCTGTTAAAACCATGAAGAGGGGGGAGAAAGTGATCTTGACAGTGAAACCCCAATATGGGTTTGGTGAGAAGGGGAGGTCAGCACTGGGTGATGAAGGTGCAGTTCCACCGAATGCAACATTGGAGATTACTCTTGAGTTAGTTTCTTGGAAGACAGTGTCAGAAGTATCCGATGACAAAAAGGTCATGAAGAAGATCCTCAAGGAAGGGGAAGGATATGAGCGTCCTAATGAGGGTGCCATTGTGAAATTGAAATTGATTGGTAAGCTGCAAGATGGCACTGTCTTTTTGAAAAAGGGCCACGATGAAGAAAATCTGTTCGAATTCAAGACAGATGAAGAGCAAGTCATCGATGGGCTTGATAGAGCTGTAGTGACTATGAAGAAGGGTGAGGTTGCATTATTAACTATTGCGCCGGAGTATGCCTTTGGTTTGTCAGAGTCACAGCAGGAGTTAGCTGTGGTTCCTCCTAACTCAACTGTATATTATGAGGTTGAGGTGGTATCCTTTGAGAAGGAGAAGGAATCATGGGATATGAACACTCAAGAGAAAATTGAAGCTGCTGGTAAGAAGAAAGAGGAAGGGAATGCACTGTTCAAGGCTGGCAAATATGCAAGAGCTTCCAAAAGATATGATAAGGCTGTGAAGTACATTGACTATGATTCATCCTTCAGCGAGGAGGAGAAAAAGCAGGCTAAGGCTTTGAAGGTTGCCAGCAATCTGAACAATGCTGCTAGCAAATTGAAGCTAAAAGAGTACAAAGAAGCAGAGAAATTGTGTACAAAGGTGTTGGAACTTGAGAGTACAAATGTGAAGGCCCTCTATAGAAGGGCCCAAGCATATATGCAATTGGCTGACTTGGATTTGGCTGAATTTGACATTAAGAAGGCTCTTGATGTTGATCCTAACAACAGGGATGTGAAACTGGAGTACAAGACTTTGAAGGAAAAGCAAAAGGAGTATAATAAAAAGGAAGCAAAGTTTTATGGAAATATGTTCAACAAACTGACAAAAGCTTAG 1647 0.4287 MDEDFGIPPMGDMNDDFGLPDDNIFKLGEEKEIGKLGLKKKLLKEGQGWDTPEVGDEVEVHYTGTLLDGTKFDSSRDRNSPFKFTLGQGQVIKGWDEGIKTMKKGENALFTIPPELAYGESGSPPTIPPNATLQFDVELLSWTSVKDICKDGGIFKKILTAGEKWENPKDPDEVLVKYEVRLEDGKLVAKFDGVEFTVGEGHYCPALSKAVKTMKRGEKVILTVKPQYGFGEKGRSALGDEGAVPPNATLEITLELVSWKTVSEVSDDKKVMKKILKEGEGYERPNEGAIVKLKLIGKLQDGTVFLKKGHDEENLFEFKTDEEQVIDGLDRAVVTMKKGEVALLTIAPEYAFGLSESQQELAVVPPNSTVYYEVEVVSFEKEKESWDMNTQEKIEAAGKKKEEGNALFKAGKYARASKRYDKAVKYIDYDSSFSEEEKKQAKALKVASNLNNAASKLKLKEYKEAEKLCTKVLELESTNVKALYRRAQAYMQLADLDLAEFDIKKALDVDPNNRDVKLEYKTLKEKQKEYNKKEAKFYGNMFNKLTKA 548
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal9g1535 548 SUPERFAMILY TPR-like 385 544 IPR011990 GO:0005515
Lal9g1535 548 Pfam Tetratricopeptide repeat 480 513 IPR001440 GO:0005515
Lal9g1535 548 ProSiteProfiles FKBP-type peptidyl-prolyl cis-trans isomerase domain profile. 288 380 IPR001179 GO:0003755
Lal9g1535 548 Gene3D - 31 145 IPR046357 GO:0003755
Lal9g1535 548 Gene3D Tetratricopeptide repeat domain 383 540 IPR011990 GO:0005515
Lal9g1535 548 Gene3D - 261 381 IPR046357 GO:0003755
Lal9g1535 548 ProSiteProfiles FKBP-type peptidyl-prolyl cis-trans isomerase domain profile. 171 260 IPR001179 GO:0003755
Lal9g1535 548 Coils Coil 513 533 - -
Lal9g1535 548 Pfam FKBP-type peptidyl-prolyl cis-trans isomerase 51 140 IPR001179 GO:0003755
Lal9g1535 548 Pfam FKBP-type peptidyl-prolyl cis-trans isomerase 282 376 IPR001179 GO:0003755
Lal9g1535 548 Pfam FKBP-type peptidyl-prolyl cis-trans isomerase 166 257 IPR001179 GO:0003755
Lal9g1535 548 SUPERFAMILY FKBP-like 147 263 - -
Lal9g1535 548 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE 269 379 - -
Lal9g1535 548 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE 379 547 - -
Lal9g1535 548 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE 1 267 - -
Lal9g1535 548 Gene3D - 146 260 IPR046357 GO:0003755
Lal9g1535 548 SMART tpr_5 397 430 IPR019734 GO:0005515
Lal9g1535 548 SMART tpr_5 446 479 IPR019734 GO:0005515
Lal9g1535 548 SMART tpr_5 480 513 IPR019734 GO:0005515
Lal9g1535 548 ProSiteProfiles TPR repeat profile. 480 513 IPR019734 GO:0005515
Lal9g1535 548 SUPERFAMILY FKBP-like 267 397 - -
Lal9g1535 548 SUPERFAMILY FKBP-like 37 154 - -
Lal9g1535 548 ProSiteProfiles FKBP-type peptidyl-prolyl cis-trans isomerase domain profile. 55 143 IPR001179 GO:0003755
Lal9g1535 548 PANTHER PEPTIDYLPROLYL ISOMERASE 1 267 - -
Lal9g1535 548 PANTHER PEPTIDYLPROLYL ISOMERASE 379 547 - -
Lal9g1535 548 PANTHER PEPTIDYLPROLYL ISOMERASE 269 379 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal9g1535 Lal-Chr9 17713535 17722581 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal9g1535 1 545 Calmodulin-binding Proteins AT3G25230 80.146 0.0 868
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal9g1535 K09571 - gmx:100812632 894.804
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal9g1535 9 17713535 17722581 Lal14g0194 14 2197268 2203827 PCT
Lal14g0194 14 2197268 2203827 Lal9g1535 9 17713535 17722581 PCT