Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal9g1532 ATGGCTAAGCCTGGAATGTTAGATTCTGATCCAGTGGTGATGTTGAAGAAGACCATAGAGTTGAAAAAGAAGGAGTTGAAGAAGTTAGTGAAGTTCATTGTTGATGATGCTGATTTTAGTATTGAAACTATTGATCAAGCAAAGGAAGTACTTTGTGTTATAAAGGATTTGAAGCTGAGAAAAAGTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCAGCATCAATGTCTTTGAAGTTGCATAAGAATGTTACTTGCCCAGATGAATTCAAGTGTCCACTTTCCAAGGAATTGATGAAAGATCCTGTTATTGTTGCTTCTGGTCTGACATACGACAGACTTTTCATTCAAAAGTGGCTGAGTGCTGGAAATAGGACTTGCCCTTCAACCCAACAAGTCCTATCACACACTGTCGTCACTCCGAATCACTTAATACGGCAAATGATAGAACAATGGTCTAAAAAACAAGGGATTGAATTGTCCAACAGTTTAAACTATTTTAATGAGGAAGGCATAACCGAAGTTGACCGTGACCAGTTTCTGTGTTTGCTTAAGAAAATGTCTTCGGCACTTTCGGATCAGAAAGCAGCCGCAAAAGAACTCCGCTTGTTGACGAAGAAGCATCCTTGCTTTCGAGTACTTTTTTGTGATTCTGTAGATGCAATTCCCCAACTGCTTAAGCCGATTTGTGGCAGTGATTCTTTTAGTAGTATTCACCCTGATCTCCAGGAAGATGTCATCACAACACTCCTCAACATCTCAATTCACGACAACAACAAGAAGCTAGTAGCCGAAACTCCGATGGTAATTCCAATCCTTATGAAAGCACTGAGATCGGGAACAATTGAAACAAGAAGCAATGCTGCAGCAGCCCTTTTCACTTTATCGGCTCTTGACTCAAACAAGGAGCTTATAGGGAAATCCGGTGCCTTAAAACCATTGATCGACCTTTTAGAAGAAGGGCATCCATCAGCCATGAAAGATGTTGCTTCAGCAATTTTTACCTTATGTGTCATTCAAGAGAACAAGGCAAGGGCAGTAAAGGACGGCGTGGTGAGCGTGATAATGAGGAAGATCAAGGACCGAATTCACATCGACGAATTACTAGCTATTCTTGCACTGCTTTCAAGTCACCATAAGGCTATTGAGGACATCGGAGAACTCGGAGCTGTTCCTAGCTTACTAAGCATTATCCGAGAAAGTTCCTGCGAACGCAACAAGGAGAATTGCGTCGCAATCCTTCAAACTGTGTGTCTCTATGATAGGTCCAAGTTAAAGGATATAAAGGAAGAGGAGAAAAATCACAGAACAATCTCTGAACTTGCACAGAATGGAACATCAAGGGCTAAGAGAAAAGCTAGTGGAATTCTTGAGAGACTTAACAGGATTGTTAATATCACACACACTGCATAA 1413 0.4084 MAKPGMLDSDPVVMLKKTIELKKKELKKLVKFIVDDADFSIETIDQAKEVLCVIKDLKLRKSSSSSSSSSSSSASMSLKLHKNVTCPDEFKCPLSKELMKDPVIVASGLTYDRLFIQKWLSAGNRTCPSTQQVLSHTVVTPNHLIRQMIEQWSKKQGIELSNSLNYFNEEGITEVDRDQFLCLLKKMSSALSDQKAAAKELRLLTKKHPCFRVLFCDSVDAIPQLLKPICGSDSFSSIHPDLQEDVITTLLNISIHDNNKKLVAETPMVIPILMKALRSGTIETRSNAAAALFTLSALDSNKELIGKSGALKPLIDLLEEGHPSAMKDVASAIFTLCVIQENKARAVKDGVVSVIMRKIKDRIHIDELLAILALLSSHHKAIEDIGELGAVPSLLSIIRESSCERNKENCVAILQTVCLYDRSKLKDIKEEEKNHRTISELAQNGTSRAKRKASGILERLNRIVNITHTA 470
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal9g1532 470 PANTHER U BOX DOMAIN-CONTAINING 5 468 - -
Lal9g1532 470 Gene3D - 160 464 IPR011989 -
Lal9g1532 470 SUPERFAMILY ARM repeat 188 460 IPR016024 -
Lal9g1532 470 Pfam U-box domain 87 156 IPR003613 GO:0004842|GO:0016567
Lal9g1532 470 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 9 5 468 - -
Lal9g1532 470 CDD RING-Ubox_PUB 90 132 IPR045210 -
Lal9g1532 470 SUPERFAMILY RING/U-box 85 160 - -
Lal9g1532 470 ProSiteProfiles U-box domain profile. 85 159 IPR003613 GO:0004842|GO:0016567
Lal9g1532 470 SMART Ubox_2 89 152 IPR003613 GO:0004842|GO:0016567
Lal9g1532 470 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 83 159 IPR013083 -
Lal9g1532 470 SMART arm_5 378 419 IPR000225 GO:0005515
Lal9g1532 470 SMART arm_5 298 338 IPR000225 GO:0005515
Lal9g1532 470 SMART arm_5 206 255 IPR000225 GO:0005515
Lal9g1532 470 SMART arm_5 256 297 IPR000225 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal9g1532 Lal-Chr9 17682666 17685802 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal9g1532 148 470 U-box Gene Family AT3G07360 60.303 1.92e-129 376
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal9g1532 - - lang:109360713 830.091
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal9g1532 9 17682666 17685802 Lal1g2127 1 23355535 23358861 LSH