Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal9g1507 ATGCCAATCCACTTTTTCAAGATCATACTTACTCACAACCTCCATGAGGGGAAGTTGATGATTCCAACAACTTTTGTTGAGAAATATGGAGAAGGCTTAGCAAAAAGTGCTTTTCTTAAGGCTCCAAATGGTGGAGAATGGAAAGTAGATTTGGTAAAAGTTGATGGTAAAATTTGGTTTCAAAATGGTTGGAAAGAATTTGCAGAATACCATTCTCTAGCTGAAGGACATGTTGTGATTTTCAGATATGAAAAAATGTCAAATTTTCATGTATTCATCTTTGATATGAGTGCCTTAGAGATAGAATACCCTTTCAAAAGAGTAGAAGGTAAAAGGGTCTTCAAGGATCAAAGAAATAAGCCTCTAATGGTTGAAAATTTGAAGAATTATAGACCAAATCAGAAGAGAAAAGATAACTCATCATTAGAATTTGTTCAACAATCTAAAAGCAAAAAGTGTAATAAAAAAGAAGGACAAAACACTACTGCTAAGAAAATTACAGCTCTTGATAGAGCTAGATCTTTCAAATCTTGTAAACCATTCTGCATGGTTTTCATGCATCCATCATACATTTTGTGCAAGTGTAATCTGAACTTACCATCCAAGTTTGGTAAAAGATGCTTCGATTTAGGCGTAAAGCGCGGCGATATCAATCTTCGGTTGGAAAGCGGGAGAGTTTGGCCTGCAAAGTACCTAATCAGGGGATCCTATACAGGACCAAAATTTGAACTCTCAATTGGGTGGAAACCTTTTGCTATGGACAATAACTTGAAAGTAGGTGATGTTTGCATCTTTGAGTTCATTGATAGAACTAAGCTTACCTTACAGGTTTACATCTTTAGAAAGACTGAAAATTCAAAATGTTCAACATCTGAAGGTTTCAAATCAAGTGTTACTAGTCCAAAAGATGAATATGAAATATCTGGACCAAGTTCAAATTTTACAGAAAAACCAATGGTAGCTGCTAAGCAAATTACAGCTCTTGATAGAGCTACTTCATTTGAAGTTTGCTATCCGTCGTTTCAGAGTTTACCATCTGAGTTTTGCGAGAGATACTTTGATTTGAGAAATAAACGGGGATATATCAATCTTCGGATGTCAAATGGAAGAGTTCAGCGCGCAATTTACCTCATCGCAAAACGCGATGCGAGAACAATGTTTCATCTCTTAAGTGGGTGGGAGGCATTTGTCAAGGAAAATGACTTGAATGTTGGTGCTGTTTGCACCTTTGAGCTCATTGATAGAACTAAACTTACCTTTCAAGTTTACATCTCTAGAGAGACTAACAACTCAAATTGTCTAACTCCTCAAGAATCTGCTGATGAGCCTCGAAATCATGAATCATCAACTCAGGTTTATAGTAGAAAGGAAAAGGGGAATAAAATCAGATTGGCGAATGAGTTGGGAAATAGAGTGGACGAGTATTTTACACAAGACTCTAATCGAATGGATACTATACAGCAGGATACCGAAGAAGAACCTGCTGGAATCATGTAA 1497 0.3647 MPIHFFKIILTHNLHEGKLMIPTTFVEKYGEGLAKSAFLKAPNGGEWKVDLVKVDGKIWFQNGWKEFAEYHSLAEGHVVIFRYEKMSNFHVFIFDMSALEIEYPFKRVEGKRVFKDQRNKPLMVENLKNYRPNQKRKDNSSLEFVQQSKSKKCNKKEGQNTTAKKITALDRARSFKSCKPFCMVFMHPSYILCKCNLNLPSKFGKRCFDLGVKRGDINLRLESGRVWPAKYLIRGSYTGPKFELSIGWKPFAMDNNLKVGDVCIFEFIDRTKLTLQVYIFRKTENSKCSTSEGFKSSVTSPKDEYEISGPSSNFTEKPMVAAKQITALDRATSFEVCYPSFQSLPSEFCERYFDLRNKRGYINLRMSNGRVQRAIYLIAKRDARTMFHLLSGWEAFVKENDLNVGAVCTFELIDRTKLTFQVYISRETNNSNCLTPQESADEPRNHESSTQVYSRKEKGNKIRLANELGNRVDEYFTQDSNRMDTIQQDTEEEPAGIM 498
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal9g1507 498 CDD B3_DNA 4 95 IPR003340 GO:0003677
Lal9g1507 498 ProSiteProfiles B3 DNA-binding domain profile. 327 428 IPR003340 GO:0003677
Lal9g1507 498 MobiDBLite consensus disorder prediction 440 457 - -
Lal9g1507 498 ProSiteProfiles B3 DNA-binding domain profile. 4 97 IPR003340 GO:0003677
Lal9g1507 498 PANTHER B3 DOMAIN-CONTAINING 302 427 - -
Lal9g1507 498 PANTHER B3 DOMAIN-CONTAINING 3 282 - -
Lal9g1507 498 Gene3D - 310 430 IPR015300 -
Lal9g1507 498 Gene3D - 160 285 IPR015300 -
Lal9g1507 498 ProSiteProfiles B3 DNA-binding domain profile. 182 283 IPR003340 GO:0003677
Lal9g1507 498 Pfam B3 DNA binding domain 185 282 IPR003340 GO:0003677
Lal9g1507 498 Pfam B3 DNA binding domain 5 94 IPR003340 GO:0003677
Lal9g1507 498 Pfam B3 DNA binding domain 343 427 IPR003340 GO:0003677
Lal9g1507 498 PANTHER TRANSCRIPTION FACTOR B3-DOMAIN FAMILY-RELATED 3 282 - -
Lal9g1507 498 PANTHER TRANSCRIPTION FACTOR B3-DOMAIN FAMILY-RELATED 302 427 - -
Lal9g1507 498 CDD B3_DNA 180 281 IPR003340 GO:0003677
Lal9g1507 498 SUPERFAMILY DNA-binding pseudobarrel domain 4 104 IPR015300 -
Lal9g1507 498 SMART B3_2 182 283 IPR003340 GO:0003677
Lal9g1507 498 SMART B3_2 334 428 IPR003340 GO:0003677
Lal9g1507 498 SMART B3_2 5 97 IPR003340 GO:0003677
Lal9g1507 498 CDD B3_DNA 343 426 IPR003340 GO:0003677
Lal9g1507 498 SUPERFAMILY DNA-binding pseudobarrel domain 340 426 IPR015300 -
Lal9g1507 498 MobiDBLite consensus disorder prediction 431 457 - -
Lal9g1507 498 Gene3D - 2 98 IPR015300 -
Lal9g1507 498 SUPERFAMILY DNA-binding pseudobarrel domain 175 283 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal9g1507 Lal-Chr9 17347322 17351976 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal9g1507 1 281 B3 DNA Binding Superfamily AT3G18990 29.480 2.84e-37 139
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Lal9g1507 B3 1.4e-16 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal9g1507 - - lang:109359945 840.106