Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal9g1504 ATGGAAAATGGGTACCATAATAATGTTGTTGATGATGATCAAAACCAACTTGAGGTTAAGCCAATCCACTTTTTCAAGATCATACTCAATCATAGTCTCCTTCAAGGGAAATTAATGATTCCTAGAGCATTCACGGATAAGTATGGAGAAGGCTTACCGAAAACTGTAATTCTTAAGGCGCCAAATGATGAAGAATGGAAAGTAAATTTGGTCAAACATGATGGTAAAATTTGGTTCCAAGAGGGTTGGAAAGAATTTGCAGAGTATCACTCTCTAGAGGAAGGGCATTTTGTTGTATTTATCTTTGATATGAGTGCCTTAGAGATAGACTACCCTTTCAAAAGAGTAGAAGGTAAAAGGGCCTACAAAGATCAAGGAGAAAAACATGCGATGGTTGAAAGTTTAGAAGATTACAGACCAAGTCAAAAGAGAAAAGACAACTCATCATTGGAATTTCTTCAATTTAAAAAGAAAAGTAGACGTGTTGAAGTTGAAAGTATCTCAAATTTGTCAAAGGCAACTTTGTGTCACACTGACATAAAGTGTGAAGAGGGGCCACATACTACTATTAAGCAGGTTTCAGCTCTTGACATGGTTCCTTCATTCAAACCTTGTAATCCATCCTTCATGGTTTTCATGCAACCATCATACATCCTCTCTCGTGGTCTTCCGAATTTACCACCAAAGTTTTGTAAGAGACACTTCGATTTGGACAACAAGCATAGAGAGGTCAATCTTCGGGTGTCTAATGGTCGAGTTTGGCCTGTAAGATACCTTATCCGGAAAATCAACAATAGAACAAAATTTGAACTTTCAAGGGGGTGGAAAGCATTTGCAAAGGGCAATAACTTGAAAGTAGGTAATGTCTGCATCTTTGAGCTAATTGATAAAAGGGATCTTAGCTTCCAGGTTTACATATCAAGCGGGACCGACAATTCAATTTGTTCAACATCTCAAGATTTCAAATTAAATGTTAGCTGTCCAAAAGCTAAATATGAAATGCTCGATTTACCGAGTTCAAAATTTGCAGAGAAACCAAAAGTTGCTACTAGTTCTAAACAAACTGCCGCGCTCGACAGAGCTAGAAACTTCAAACCTTGTAATCCATCCTTCTTGGTTGTCATGCGTCCATCATACATCAATTTTCAAGCTAAGTTGAGTTTACCATCCAAGTTTGTTAAGAGATACTTCGACATGGGCATAAAGAATGGAGAAATGAATCTACTGTTGGCAAATGGGAGAGTCTGGCCTACAAGGTACTGCATTAGGGGAGACTGTGATAGAACAAGATTTGAACTCTCAAGTGGGTGGAAACAATTTTGCAAGGACAACAACTTAGAAGTAGGTGATGTTTGCATCTTTGAGCTCATTGATAGAACTAAGCTTGCCTTCCAAGTTTGTATCTTTAGAGAGACTGATAATTCAATTTGTCCAGCTTCTCAAGAATCTGCTAATGGGGAAGTGATGGAAAGTGACATGAATATGAAGGGAATGTAG 1497 0.3801 MENGYHNNVVDDDQNQLEVKPIHFFKIILNHSLLQGKLMIPRAFTDKYGEGLPKTVILKAPNDEEWKVNLVKHDGKIWFQEGWKEFAEYHSLEEGHFVVFIFDMSALEIDYPFKRVEGKRAYKDQGEKHAMVESLEDYRPSQKRKDNSSLEFLQFKKKSRRVEVESISNLSKATLCHTDIKCEEGPHTTIKQVSALDMVPSFKPCNPSFMVFMQPSYILSRGLPNLPPKFCKRHFDLDNKHREVNLRVSNGRVWPVRYLIRKINNRTKFELSRGWKAFAKGNNLKVGNVCIFELIDKRDLSFQVYISSGTDNSICSTSQDFKLNVSCPKAKYEMLDLPSSKFAEKPKVATSSKQTAALDRARNFKPCNPSFLVVMRPSYINFQAKLSLPSKFVKRYFDMGIKNGEMNLLLANGRVWPTRYCIRGDCDRTRFELSSGWKQFCKDNNLEVGDVCIFELIDRTKLAFQVCIFRETDNSICPASQESANGEVMESDMNMKGM 498
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal9g1504 498 Gene3D - 16 110 IPR015300 -
Lal9g1504 498 SUPERFAMILY DNA-binding pseudobarrel domain 204 311 IPR015300 -
Lal9g1504 498 Pfam B3 DNA binding domain 209 308 IPR003340 GO:0003677
Lal9g1504 498 Pfam B3 DNA binding domain 371 471 IPR003340 GO:0003677
Lal9g1504 498 Pfam B3 DNA binding domain 24 102 IPR003340 GO:0003677
Lal9g1504 498 ProSiteProfiles B3 DNA-binding domain profile. 23 117 IPR003340 GO:0003677
Lal9g1504 498 CDD B3_DNA 23 108 IPR003340 GO:0003677
Lal9g1504 498 SUPERFAMILY DNA-binding pseudobarrel domain 364 470 IPR015300 -
Lal9g1504 498 Gene3D - 188 311 IPR015300 -
Lal9g1504 498 Gene3D - 348 474 IPR015300 -
Lal9g1504 498 SMART B3_2 209 310 IPR003340 GO:0003677
Lal9g1504 498 SMART B3_2 371 472 IPR003340 GO:0003677
Lal9g1504 498 SMART B3_2 24 116 IPR003340 GO:0003677
Lal9g1504 498 PANTHER B3 DOMAIN-CONTAINING 15 307 - -
Lal9g1504 498 PANTHER B3 DOMAIN-CONTAINING 345 471 - -
Lal9g1504 498 SUPERFAMILY DNA-binding pseudobarrel domain 20 103 IPR015300 -
Lal9g1504 498 CDD B3_DNA 207 306 IPR003340 GO:0003677
Lal9g1504 498 ProSiteProfiles B3 DNA-binding domain profile. 371 472 IPR003340 GO:0003677
Lal9g1504 498 ProSiteProfiles B3 DNA-binding domain profile. 209 310 IPR003340 GO:0003677
Lal9g1504 498 PANTHER TRANSCRIPTION FACTOR B3-DOMAIN FAMILY-RELATED 15 307 - -
Lal9g1504 498 PANTHER TRANSCRIPTION FACTOR B3-DOMAIN FAMILY-RELATED 345 471 - -
Lal9g1504 498 CDD B3_DNA 369 470 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal9g1504 Lal-Chr9 17338103 17343262 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal9g1504 340 473 B3 DNA Binding Superfamily AT3G18990 36.232 1.21e-17 82.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Lal9g1504 B3 2.2e-21 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal9g1504 - - lang:109359945 535.028