Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal9g1490 ATGCCTCCAAGAGTGGTGAAGAGAGGTGCCGCAAGGAGAATGTTAATAGCAGCGAAGGAATCTTCCAACGCTACAATTCAGAACCAGAAGAAGAATCATGAAGCTGCTTCTGAAGAATTTTTGAATCATGAAAAAAACCCTATTGCTGAGGAAGAGAAGGAAAAGAATTCTGTTGTTGCTGTTGAAGATAAAATCGTTCATGTGAAAAACGATGTAGAGAAGGTTAAGGAGTCAATAGATGAATATGAAAAAGATGAACGCTTAGATTTGGAGGATAATTATCCCGAGTATGAAAACGAGGAGGATGGTGGAGTCGATTATGATGAGAAGGGAATTGAACAAGATGATGGTCAGGAGGTGGGATATGAAGTAGAGGAAGACCATGAAGAGGATGTGGGTGAAGAAGAGAGTGATACGGGTGATGAAGAAATTGAATATGTTTATGAAGAAGTTGAAGAAGATGATGACGGTGGTGAGCATGTTGAGCATGCGGGTGAGGAGCATGAGCCTGAAAAGCCTGAAAAGGTGGCCGATGCGGATGAAGTGGTACACCATGAACTTGTGACTGAAAGGAGGAAGCAGAGGGAATTTGAAGTATTTGTTGGGGGGCTAAATAAGGATGCTACTGAGGATGATCTGAGGAAGGTTTTCAGTGAAGTTGGGGTGGTTGTTGAAATCAGGCTGATGATGAACCCTTACACTAAAAAGAACAAGGGATTTGCGTTCTTGCGTTTTGAAACTGTTGAACAAGCTAAAAGAGCAATAGCAGATCTGAAAAATCCAGTGATTAATGGCAAACAATGTGGTGTTGCTCCATGTCAGGACAATGATACCCTCTATTTGGGTAATATATGCAAGAGATGGACAAAAGAAGCTTTAAAGGAGAAGTTGAAACATTATGGAGTTGAGAATGTTGATGAATTGACTTTAGTAGAAGATAGTAACAATGAGGGAATGAACCGTGGATTTGCATTTTTGGACTTTTCATCTCATTCAGATGCTAAGGTAGCCTATAAGCGACTGCAGAAGAGAGATGTTATGTTTGGAGTTGATAAGCCTGCAAAGGTTTCCTTTGCAGACTCCTTTACTGAGCTGGGTGATGGAATTGTGAGAGAGGCTAAAACTGTGTTTATTGATCCACTGCCTCCATCATGGGATGAAGAATATGTCCGCAATCATCTTAAGATATATGGGGAGATTGAAAAGATTGAGCTTGCAAGGAACATGCCAGCTTCCCGCAGGAAAAACTACGGATATGTGACTTTTTGTACACATGCTGCTGCTGCGGAATGTGTTGATAGCATTAACAGTGCAGGGTTAGGTGAAGGTGACAAGGTGAAAGTTCGGGCTAAATTGTCAAGACCACTTCGGAGACGCAGTGGAAAACATGTCAGTCATGGGGCCCACTCTTCTGGTCGCAATCCTAAAAAAACAGCAAGGCCTTCTTGGAGTCACCCTGCACCAATTAGTCGACCTGCACCACGTAGTCGACCTGCACCACGCACCAAACCTGCTCGTGTGGTAAGAGGAATTGGAAGCCGTGTTCCGCCAGTTAGACCTGTTAGAGTGAGAGATAGACACCCGGTTATGTTCGTGCCAGTTAGAGCTAGGCCAGTGGCTCCTCCAACTAGATCCTATAATAGGAGACCAGCTGCTCCTGCATATCCAAAACATAGCACGGAGATAGATTACGGTCAACGTGAGGAACTGCCACCTCCAAGTAGAGCTTCTATGGATTACAACTATCGGGTGTCCTCCCAAAGACAGCCATCTTATAAGGATTATCCACCCCGCAGCCCTGGTTACTCTGAGCTCCCTAGAAGCACATCTCATGCTGCCTCAAGGAGAGGGTATGTGGATGATGCCTATGGACAAAGGTTTGAGAGGTCCTCTCCTCCCTCCCATCTAAGTTATCGTGAAGGGCACCCGCATGATTATGACACACTACCTGAGTTGAAACGTCCTTATAGTGCCGTAGGTGATGTTCCTCCACGATATGTGGATACTGGTGTTCGCCACTCAAGAGCACGTTTGGACTATGACTATGTAGGTAGTGCTCGACAGTATGGCGATGCTTATGGAGACAGGTTCGGAAGGTCTAGTGGGGAATATAATGGTAGCAGAGGTTCTATTTCTTCACAAGACACACATGGGATGTATAGCAGTCGGCAGGGCGTGAGTTATGGTGAAGGTTCTTTTGGTGCTACGCACTCGTCAGGTTATGGCGATGATGATTATATGTCTCGTGAAAGTGATGTTGGCGCCGGTTCCTATTCATCGATTTATTCTCGCAGGGATCTAGGTGGTAGCAGCAGTTACATGGGTGGTGGAGGATCTCGGTCTTATTATTGA 2352 0.4486 MPPRVVKRGAARRMLIAAKESSNATIQNQKKNHEAASEEFLNHEKNPIAEEEKEKNSVVAVEDKIVHVKNDVEKVKESIDEYEKDERLDLEDNYPEYENEEDGGVDYDEKGIEQDDGQEVGYEVEEDHEEDVGEEESDTGDEEIEYVYEEVEEDDDGGEHVEHAGEEHEPEKPEKVADADEVVHHELVTERRKQREFEVFVGGLNKDATEDDLRKVFSEVGVVVEIRLMMNPYTKKNKGFAFLRFETVEQAKRAIADLKNPVINGKQCGVAPCQDNDTLYLGNICKRWTKEALKEKLKHYGVENVDELTLVEDSNNEGMNRGFAFLDFSSHSDAKVAYKRLQKRDVMFGVDKPAKVSFADSFTELGDGIVREAKTVFIDPLPPSWDEEYVRNHLKIYGEIEKIELARNMPASRRKNYGYVTFCTHAAAAECVDSINSAGLGEGDKVKVRAKLSRPLRRRSGKHVSHGAHSSGRNPKKTARPSWSHPAPISRPAPRSRPAPRTKPARVVRGIGSRVPPVRPVRVRDRHPVMFVPVRARPVAPPTRSYNRRPAAPAYPKHSTEIDYGQREELPPPSRASMDYNYRVSSQRQPSYKDYPPRSPGYSELPRSTSHAASRRGYVDDAYGQRFERSSPPSHLSYREGHPHDYDTLPELKRPYSAVGDVPPRYVDTGVRHSRARLDYDYVGSARQYGDAYGDRFGRSSGEYNGSRGSISSQDTHGMYSSRQGVSYGEGSFGATHSSGYGDDDYMSRESDVGAGSYSSIYSRRDLGGSSSYMGGGGSRSYY 783
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal9g1490 783 MobiDBLite consensus disorder prediction 450 513 - -
Lal9g1490 783 MobiDBLite consensus disorder prediction 118 160 - -
Lal9g1490 783 Gene3D - 277 360 IPR012677 -
Lal9g1490 783 MobiDBLite consensus disorder prediction 81 177 - -
Lal9g1490 783 MobiDBLite consensus disorder prediction 32 56 - -
Lal9g1490 783 MobiDBLite consensus disorder prediction 703 725 - -
Lal9g1490 783 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 374 453 IPR000504 GO:0003723
Lal9g1490 783 CDD RRM_SF 279 357 - -
Lal9g1490 783 MobiDBLite consensus disorder prediction 633 651 - -
Lal9g1490 783 MobiDBLite consensus disorder prediction 19 56 - -
Lal9g1490 783 PANTHER RNA RECOGNITION MOTIF 1 783 - -
Lal9g1490 783 MobiDBLite consensus disorder prediction 161 177 - -
Lal9g1490 783 MobiDBLite consensus disorder prediction 579 593 - -
Lal9g1490 783 SMART rrm1_1 375 449 IPR000504 GO:0003723
Lal9g1490 783 SMART rrm1_1 278 357 IPR000504 GO:0003723
Lal9g1490 783 SMART rrm1_1 198 271 IPR000504 GO:0003723
Lal9g1490 783 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 197 275 IPR000504 GO:0003723
Lal9g1490 783 MobiDBLite consensus disorder prediction 539 661 - -
Lal9g1490 783 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 277 361 IPR000504 GO:0003723
Lal9g1490 783 Coils Coil 65 85 - -
Lal9g1490 783 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 279 346 IPR000504 GO:0003723
Lal9g1490 783 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 199 267 IPR000504 GO:0003723
Lal9g1490 783 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 376 438 IPR000504 GO:0003723
Lal9g1490 783 MobiDBLite consensus disorder prediction 451 470 - -
Lal9g1490 783 SUPERFAMILY RNA-binding domain, RBD 198 344 IPR035979 GO:0003676
Lal9g1490 783 SUPERFAMILY RNA-binding domain, RBD 370 474 IPR035979 GO:0003676
Lal9g1490 783 Coils Coil 19 46 - -
Lal9g1490 783 MobiDBLite consensus disorder prediction 700 725 - -
Lal9g1490 783 MobiDBLite consensus disorder prediction 759 783 - -
Lal9g1490 783 MobiDBLite consensus disorder prediction 92 109 - -
Lal9g1490 783 Gene3D - 118 276 IPR012677 -
Lal9g1490 783 CDD RRM_SF 376 449 - -
Lal9g1490 783 Gene3D - 366 482 IPR012677 -
Lal9g1490 783 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 1 783 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal9g1490 Lal-Chr9 17180006 17185824 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal9g1490 199 436 Eukaryotic Initiation Factors Gene Family AT4G34110 22.901 1.40e-12 69.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal9g1490 - - gmx:100777658 859.751
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal9g1490 9 17180006 17185824 Lal9g1490 9 17180006 17185824 ECH
Lal14g0128 14 1266125 1273155 Lal9g1490 9 17180006 17185824 PCT
Lal19g0032 19 246016 252055 Lal9g1490 9 17180006 17185824 PCT