Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal9g1475 ATGGCTTTCACTACCATGAACTCAAATCTTGAACATGTTTCACAGCATCTCCATGACAATGATTCAAACACTGTGATGAGATTTTCAGACAAAACATTATATCAAACATTTCCAAACCCTAGTTGTGATAATAATAATTCTGATACAACAGTGTTGTTACACAGTCACCATTCTACCACCTTGGCCGCGGGTGAACCTCACGCGCCTCCAAGATCGAAGCATTACCGCGGCGTGAGGCGTAGACCATGGGGAAAGTTTGCAGCAGAGATAAGAGACCCAAAGAAAAATGGTGGTAGGGTTTGGCTTGGAACTTATGAAACTGAAGAAAAAGCAGCTATAGCTTATGATAAAGCTGCTTTTAAGATACATGGTCAAAAAGCTAAGTTGAATTTTCCAAACCTCTTAGAATTAGATTCACCTATATCACCATTGTTAGAGAATAATAGTTCAGATTCACAAGGATTGAAGAGAAGAAACTTTGCTGATATACTGAATAAGTTAGCTAATTATAGAAACCTAGCCATGAGGTTGAATCAGACTTAG 543 0.3849 MAFTTMNSNLEHVSQHLHDNDSNTVMRFSDKTLYQTFPNPSCDNNNSDTTVLLHSHHSTTLAAGEPHAPPRSKHYRGVRRRPWGKFAAEIRDPKKNGGRVWLGTYETEEKAAIAYDKAAFKIHGQKAKLNFPNLLELDSPISPLLENNSSDSQGLKRRNFADILNKLANYRNLAMRLNQT 180
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal9g1475 180 PRINTS Ethylene responsive element binding protein signature 75 86 IPR001471 GO:0003700|GO:0006355
Lal9g1475 180 PRINTS Ethylene responsive element binding protein signature 114 134 IPR001471 GO:0003700|GO:0006355
Lal9g1475 180 SMART rav1_2 74 138 IPR001471 GO:0003700|GO:0006355
Lal9g1475 180 Gene3D AP2/ERF domain 73 133 IPR036955 GO:0003700|GO:0006355
Lal9g1475 180 CDD AP2 73 134 IPR001471 GO:0003700|GO:0006355
Lal9g1475 180 Pfam AP2 domain 74 124 IPR001471 GO:0003700|GO:0006355
Lal9g1475 180 ProSiteProfiles AP2/ERF domain profile. 74 132 IPR001471 GO:0003700|GO:0006355
Lal9g1475 180 PANTHER DNA-BINDING DOMAIN 9 172 IPR044808 GO:0003700|GO:0009873
Lal9g1475 180 SUPERFAMILY DNA-binding domain 74 133 IPR016177 GO:0003677
Lal9g1475 180 PANTHER AP2-DOMAIN DNA-BINDING PROTEIN 9 172 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal9g1475 Lal-Chr9 17071787 17072329 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal9g1475 60 135 AP2-EREBP Transcription Factor Family AT2G44840 72.727 1.49e-34 119
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Lal9g1475 AP2 1.9e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal9g1475 K09286 - gmx:100806588 169.474
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal9g1475 9 17071787 17072329 Lal9g1475 9 17071787 17072329 ECH