Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal9g1468 ATGGGTGAGAAAAATGATGTGTTAGGGTTAAGTTTGAGATTGAGTTTTGGAGGATGTGGAATGGTGAATCTACCTCCTTCTATTTCAAAGGTGAATCACAACATGCACAAGCATTCTCAATTGGTTTCTGTGAACAATGATTTGTCTAAGTTTCCTGTAGCAATGGATTGTGTGAACGACAATGGCGATTCACCGCCGAACAGCACATTATCAAGCTTAAGTGTCTGCAAGCAAAGTGAGAGGGATGACAATGATGTTGCCGCTAGGGCATCATGCTCTCTAGGCAGTGATGACGATGATGATGGTGGCGATGGTGATGTTGCGAGAAAAAAGTTAAGACTCACAAAGGAACAAGCCTATGTGCTTGAAGAAACGTTCAAGGAGCATAACACACTCAATCCGAAACAAAAGCAATCTTTGGCAATGGAGTTGAGCTTGAAGCCTAGACAAGTGGAGGTGTGGTTTCAGAACAGAAGAGCAAGGAACAAGTTGAAGCAAACTGAAGTAAATTGTGAATCCTTGAAGAGGTGTTCTAAGAATCTAACCGAAGAGAATAAAAGGTTACAAAAGGAAGTGCAAGAGCTTAGGGCATTGAAATTATCCCCACATCTTTACATGCATATGAACCCTCCCACCACTCTAACAATGTGCCCTTCATGTGAGCGTGTCACGATTTCATCAACATCGTCCTCCTCCTCAACCGCATCGCAATCGATCGTAGCATCGAGTATTCATAATCCGTTGGACTTAACCCTCCGGTTGGGGGCTGGTGGTGCCCGTCAAACCTAG 789 0.4385 MGEKNDVLGLSLRLSFGGCGMVNLPPSISKVNHNMHKHSQLVSVNNDLSKFPVAMDCVNDNGDSPPNSTLSSLSVCKQSERDDNDVAARASCSLGSDDDDDGGDGDVARKKLRLTKEQAYVLEETFKEHNTLNPKQKQSLAMELSLKPRQVEVWFQNRRARNKLKQTEVNCESLKRCSKNLTEENKRLQKEVQELRALKLSPHLYMHMNPPTTLTMCPSCERVTISSTSSSSSTASQSIVASSIHNPLDLTLRLGAGGARQT 262
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal9g1468 262 ProSiteProfiles 'Homeobox' domain profile. 105 165 IPR001356 GO:0003677
Lal9g1468 262 Coils Coil 157 201 - -
Lal9g1468 262 SMART HOX_1 107 169 IPR001356 GO:0003677
Lal9g1468 262 Pfam Homeodomain 109 163 IPR001356 GO:0003677
Lal9g1468 262 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN HAT3 30 239 - -
Lal9g1468 262 Pfam HD-ZIP protein N terminus 30 82 IPR006712 GO:0005634
Lal9g1468 262 CDD homeodomain 109 166 IPR001356 GO:0003677
Lal9g1468 262 SUPERFAMILY Homeodomain-like 93 166 IPR009057 -
Lal9g1468 262 SMART halz 165 208 IPR003106 GO:0006355|GO:0043565
Lal9g1468 262 Gene3D - 96 170 - -
Lal9g1468 262 ProSitePatterns 'Homeobox' domain signature. 140 163 IPR017970 GO:0000981|GO:0006355
Lal9g1468 262 PANTHER - 30 239 - -
Lal9g1468 262 Pfam Homeobox associated leucine zipper 165 199 IPR003106 GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal9g1468 Lal-Chr9 16989441 16993599 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal9g1468 22 222 Homeobox Transcription Factor Family AT3G60390 58.696 1.40e-77 236
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Lal9g1468 Homeodomain 7.6e-17 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal9g1468 K09338 - gmx:100819624 265.003
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal9g1468 9 16989441 16993599 Lal9g1468 9 16989441 16993599 ECH