Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal9g1463 ATGGAAAATGATGCTCATTCCACAAACTCCACTTCTTCATCAACAACATCTTCTAACTCAAACTCAAATTCATGCACCAAACAAATCACCAAAAAGGGTCTTTCAAATGATGCAACAAAAGCTCAAAACTCACAAGATGGAACCAAAGAATGCAACAAGAGGCAAAGGAGTGAAAATGAAGCAATAAAGCACCCTACTTATAGGGGTGTGAGAATGAGAAATTGGGGCAAATGGGTATCTGAAATTCGTGAGCCAAGAAAGAAATCAAGAATATGGTTAGGGACATACCCTACAGCAGAAATGGCAGCAAGGGCACATGATGTTGCTGCTTTAGCTATCAAAGGAAAATCAGCTTTTCTCAATTTCCCTAAATTATCACAAGAACTTCCAAGGCCTGCAAGTACATCTCCTAAGGATATTCAAGCTGCAGCTGCAAAAGCAGCTACTACTATCTTTTATGAAGAAGAAGCTTCTAAGCATTGTGAAGTTGATGATTGTGCTGAAACTGAACTGAACCAAGTAGTAGAACAAGGTTCATGTTCAACTCTTTCATTGGATAATTCTCTAGAGTCTTCAAGTTCTCCCTCTACTATAGATGATGATGATACATTGTTTGACCTACCAGATCTTTTCCCTGATGGAAACAATGGACTTTTCTCCTATTCTTCTTCTTGGCATTTATGTACAGTTTTCAGTGGGTTCAGGCAAGATGATCAATTTTTGTGGGAGAATTATTCATCCTAG 744 0.3844 MENDAHSTNSTSSSTTSSNSNSNSCTKQITKKGLSNDATKAQNSQDGTKECNKRQRSENEAIKHPTYRGVRMRNWGKWVSEIREPRKKSRIWLGTYPTAEMAARAHDVAALAIKGKSAFLNFPKLSQELPRPASTSPKDIQAAAAKAATTIFYEEEASKHCEVDDCAETELNQVVEQGSCSTLSLDNSLESSSSPSTIDDDDTLFDLPDLFPDGNNGLFSYSSSWHLCTVFSGFRQDDQFLWENYSS 247
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal9g1463 247 MobiDBLite consensus disorder prediction 47 65 - -
Lal9g1463 247 ProSiteProfiles AP2/ERF domain profile. 66 123 IPR001471 GO:0003700|GO:0006355
Lal9g1463 247 CDD AP2 67 123 IPR001471 GO:0003700|GO:0006355
Lal9g1463 247 SUPERFAMILY DNA-binding domain 66 123 IPR016177 GO:0003677
Lal9g1463 247 Gene3D AP2/ERF domain 66 124 IPR036955 GO:0003700|GO:0006355
Lal9g1463 247 PRINTS Ethylene responsive element binding protein signature 67 78 IPR001471 GO:0003700|GO:0006355
Lal9g1463 247 PRINTS Ethylene responsive element binding protein signature 89 105 IPR001471 GO:0003700|GO:0006355
Lal9g1463 247 SMART rav1_2 66 129 IPR001471 GO:0003700|GO:0006355
Lal9g1463 247 MobiDBLite consensus disorder prediction 1 65 - -
Lal9g1463 247 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 6 245 - -
Lal9g1463 247 MobiDBLite consensus disorder prediction 1 46 - -
Lal9g1463 247 Pfam AP2 domain 65 115 IPR001471 GO:0003700|GO:0006355
Lal9g1463 247 PIRSF PTI6 2 175 IPR017392 GO:0003700
Lal9g1463 247 PIRSF PTI6 139 211 IPR017392 GO:0003700
Lal9g1463 247 PANTHER ETHYLENE RESPONSE FACTOR 6 245 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal9g1463 Lal-Chr9 16931229 16931972 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal9g1463 54 241 AP2-EREBP Transcription Factor Family AT2G44940 53.398 3.49e-63 197
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Lal9g1463 AP2 8e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal9g1463 - - gmx:100801129 273.478
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal9g1463 9 16931229 16931972 Lal9g1463 9 16931229 16931972 ECH
Lal2g1621 2 18308031 18308810 Lal9g1463 9 16931229 16931972 LSH
Lal9g1463 9 16931229 16931972 Lal1g2072 1 22938565 22939296 LSH