Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal9g1462 ATGGGGAGTATGATGGGTGAATCAGATAGAAAACGACGTCACTTTAGTTCCTTGTCACCTACAGCTATTGTTGCTCCTACTAAGAACCTTCCCATCTTGCCAATCTCACTGGACAAGAAGCTTGATATAGCTATACTTCAGTTTCAATGTCAAAAGCTTACACAGAAATTAGATACCCAGAAGTTAGAATATACAGCTCTTGAGAATAAATTTTCTCAACTGAAGGTGAGGCAACAGCCATATGATTCCACTTTAGCTGTGGTCAAGAAGTCATGGGAGCAGCTGAATAATGATTTGGAGTTGTTTTCTGAACATGCAAGAGAGTCTAGCAGCAAATTGGATTCAAAATATTCATCAATCACAGGAGATGGTAGTCCATCAACTGCACAGGACATTTTTCTTAGCCGACTTCTGCAAACTGGTGCAACTGAAAGTTCCTCTACATATAACTTTGCAACCCAGTTGGAGGAGAATAGAAAAATTACACCTGAAAAAGCTAAAAGCACTTTAAAAAACATAATGACAACTATTAATAACTTTTGGTGTCTGAAGGATGGATTGCATACTGCGGTACTGAAAAAGCTTCCAGGAGTTGTTTCATGCAGGCAGAATCCATCCATTGATCTGGAGGAAGTTAGAAACTTAAGATTGACATTCAGTGAACTTCATTTAAAGCACAAATCTTTAGCATGTGAGCTCCTATTTCATAGAGATCTTGCTGCCAAAAATAAAGCCGACCTTAAAAGGTTAAAAGAGCAATCTTTCAGTCTGAACAGAGTCAATCTTTCCAGTCTGAAAACGACAGAAATGATTGCAGTGCAAGTCAGAGATTTATATCAAGAGCGGTATGAGCGTGATGAAGGTGCAAAAAACAATAGACAAGGGCACAAGGCTGTGATGAAGGCGGCTTGGCTACTATGGTATTTTGACGAGTACCCACGGGTCCGGATATTTTTGCCATCCCTATGTTTGTCTAAGGTGAAGGCAGATCTGGGTAGAGGTGGTGAAGGTGAGTTTGGTGCCACCAATGGTTGTTGCCTGTTGGTGATGGTGACTGATGTGCTGGTGAAGGGGATGCGAGCCACACATACCAGGGTGCATCAGAGGGATGCTTCGGGTGGGTGGACATGGAAGGGGAATGTTGAGTCATATGTTGAGGTCACTGGTGAGCTGGAAAGCACTGTTGCAGAATTAGAAGAAAGCAATCACAGGCTTGCAACTCTGGAGGAAGAGGGTGAGGGTGCAAAAGGGGTGGTTCTCCCAGTCTTAAGTGTAGGAAGTACTCAGGTTGCTGGTGTTAAGGCCAGGGATAAGCAAAAGGATTTGCATGATATGGAATCTAATCTGAAGGAGCTATTGGACCAAGTTTCATCTCGATTAGTCGAACTGAAAAGTCTTCATGAGGAAAGAATAAGAATATTACAGCAGTTGTGTGATCTGCAGAATTCACTGAAGAATTTGAAGTGTATTACTTCTTCCCGTGCTTTCCAATTGGTTAGAGATCAGATAGAAAAATCAAAATCCGGAGTTCTTGAATATCAAGCTTTGTTCGAAAAACTACAGGTTGAGAAGGATAATCTTGCATGGAGTGAGAGAGAGTGGTACATTAAAAATGATATAGCAGATATTTTTCAAAGATCTATCGCTGTTTCTGATTCTAGAGTAGCTGATTTACGGGCTGAGATACAAAAAATGATACATGAAAGGAATATGATTGAAAATAAGCTGAAAGAGGAAGCAAGAGAACCAGGAAGAAAACAAGTTATTGCCGTATTTAAATCCCTGGTTTCTTCATTTCCCAAGGAAATGGAATCTATGGAAACTGAACTAAGTAAGTATAAAGAATCAGCTTCAGATATCCATTCTTTGCGTGCAGATTTGGCGTCTTTGGCTAGTATTTCTGAGAGGAAGGTAAAAGAATGTGACAATTTATCTGTTAGGTCTGCTGGTCAACTTGCTGAGATAAATAGGCTGCATGCTGTGGTTCGAGACTTGAGAATGATTGAGCAGCAAGATAATTTGTTCCTGGAAATGTTTAAATATGAGTCCACTGGTTCAAGGGATGTCTTGGAAGCAAGGGAAGCAGAATACAAAGCGCGGGCACTTGTACAAATGTTGACATCTTCTCTTGACGAGCACAAGTTAGAACTTCTAGTTAAGACAGCAATTGAAGCAGAGGCCAGATCTCAACAAAGGCTGTCTGCTACTGAAGCTGAGATAGCAGATATGAGACAGAAGATAGAAGCTTCTAAAAGAGAGATGTCAACACTGTCTGGGGTCTTGAAATCAAAAAACAAAGAAAATGAAGCCTACTTATCTGAAGTAGAGTCTATTGGACAGGCATATGGTGACATGCAAACTCAGAACCAACAACTGTTGCAGCAGATAACTGAAAGAGATGATTATAATATTAAGCTTGTTTTAGAGGGTTTAAGGGCAAGACAGAATCTGGATTCGCTGGTCAGGGAGAAGCAAGCAGTGGAACATGAGATCCAGCAAGCAAATGTATCCCTGAATTTATATGACAAAAAATCTGCAAGAATTGAAGAACAGCTGAAGTATTGTTCAGATCAGATCCAAAGACTTGGAGAGGATAAGCTTCAATCTTCTACGACTTTGGAATTTACACAAAGAAGGCTGTCGGATGTTAGAAGAACATGTCAACAGGCTAGGGATACATTAGACGAAGTACAGTCTAAAGTCAGCAGTAGTCGAGTGACTCGTATGGAGTTGCAAGTAGAACATGAAAAAGAAAGGTTTTCCAAGAAAAGAATAGAGGAGGAGCTGGAGGCTGCCAGGAGAAAATTTTCACTCCTTAAAGCACAGAACGAGGGCTCTTCATTGATTGAAAAACTTCAAAATGAACTTCAAGAGTACAGGGAAATTGTCAAGTGCACTATTTGCAAAGTCAGGACAAAACAGGTGGTAATTACAAAATGCTTCCACTTGTTCTGCAATTCATGTGTCCAGACAGTTGCTGGGAGTCGGCACCGCAAATGTCCACAGTGTGGCACAAGCTTTGGGTCTAATGATGTTAAGCCTGTTTATATGTAA 3054 0.407 MGSMMGESDRKRRHFSSLSPTAIVAPTKNLPILPISLDKKLDIAILQFQCQKLTQKLDTQKLEYTALENKFSQLKVRQQPYDSTLAVVKKSWEQLNNDLELFSEHARESSSKLDSKYSSITGDGSPSTAQDIFLSRLLQTGATESSSTYNFATQLEENRKITPEKAKSTLKNIMTTINNFWCLKDGLHTAVLKKLPGVVSCRQNPSIDLEEVRNLRLTFSELHLKHKSLACELLFHRDLAAKNKADLKRLKEQSFSLNRVNLSSLKTTEMIAVQVRDLYQERYERDEGAKNNRQGHKAVMKAAWLLWYFDEYPRVRIFLPSLCLSKVKADLGRGGEGEFGATNGCCLLVMVTDVLVKGMRATHTRVHQRDASGGWTWKGNVESYVEVTGELESTVAELEESNHRLATLEEEGEGAKGVVLPVLSVGSTQVAGVKARDKQKDLHDMESNLKELLDQVSSRLVELKSLHEERIRILQQLCDLQNSLKNLKCITSSRAFQLVRDQIEKSKSGVLEYQALFEKLQVEKDNLAWSEREWYIKNDIADIFQRSIAVSDSRVADLRAEIQKMIHERNMIENKLKEEAREPGRKQVIAVFKSLVSSFPKEMESMETELSKYKESASDIHSLRADLASLASISERKVKECDNLSVRSAGQLAEINRLHAVVRDLRMIEQQDNLFLEMFKYESTGSRDVLEAREAEYKARALVQMLTSSLDEHKLELLVKTAIEAEARSQQRLSATEAEIADMRQKIEASKREMSTLSGVLKSKNKENEAYLSEVESIGQAYGDMQTQNQQLLQQITERDDYNIKLVLEGLRARQNLDSLVREKQAVEHEIQQANVSLNLYDKKSARIEEQLKYCSDQIQRLGEDKLQSSTTLEFTQRRLSDVRRTCQQARDTLDEVQSKVSSSRVTRMELQVEHEKERFSKKRIEEELEAARRKFSLLKAQNEGSSLIEKLQNELQEYREIVKCTICKVRTKQVVITKCFHLFCNSCVQTVAGSRHRKCPQCGTSFGSNDVKPVYM 1017
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal9g1462 1017 Coils Coil 555 582 - -
Lal9g1462 1017 Coils Coil 435 455 - -
Lal9g1462 1017 Coils Coil 817 837 - -
Lal9g1462 1017 Coils Coil 873 900 - -
Lal9g1462 1017 Coils Coil 391 411 - -
Lal9g1462 1017 ProSiteProfiles Zinc finger RING-type profile. 965 1003 IPR001841 -
Lal9g1462 1017 SMART ring_2 965 1003 IPR001841 -
Lal9g1462 1017 PANTHER RING FINGER PROTEIN-RELATED 386 1017 IPR013956 GO:0004842|GO:0010390
Lal9g1462 1017 PANTHER RING FINGER PROTEIN-RELATED 5 253 IPR013956 GO:0004842|GO:0010390
Lal9g1462 1017 Coils Coil 726 753 - -
Lal9g1462 1017 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 947 1017 IPR013083 -
Lal9g1462 1017 Pfam Zinc finger, C3HC4 type (RING finger) 963 1006 - -
Lal9g1462 1017 Coils Coil 50 77 - -
Lal9g1462 1017 Coils Coil 915 969 - -
Lal9g1462 1017 ProSitePatterns Zinc finger RING-type signature. 980 989 IPR017907 -
Lal9g1462 1017 SUPERFAMILY RING/U-box 957 1016 - -
Lal9g1462 1017 PANTHER E3 UBIQUITIN-PROTEIN LIGASE BRE1-LIKE 1 5 253 - -
Lal9g1462 1017 PANTHER E3 UBIQUITIN-PROTEIN LIGASE BRE1-LIKE 1 386 1017 - -
Lal9g1462 1017 CDD RING-HC_BRE1_like 963 1004 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal9g1462 Lal-Chr9 16888620 16908484 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal9g1462 K10696 - gmx:100790744 904.049
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal9g1462 9 16888620 16908484 Lal9g1462 9 16888620 16908484 ECH
Lal2g1616 2 18208218 18239434 Lal9g1462 9 16888620 16908484 LSH