Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal9g1423 ATGGTTATGGTGAATCCTGTGCCTGAAATTGGAGAAAACCTTACTCCATCAATGGTTGAAGAATCACTCTATATTGCTGTATCAAAAGATGTGAAAGAGAACAAATTAAATCTGATATGGGCAATTCAGAACTCAGGGAGAAAAAGAATTTGCATCCTTCATGTTCATGTGCCACCAACAGTGAATCCATTGATTGGTGCTAAATTTCCTCCAGGTTCATCCAAAGAGCAAGAATTTCGAGCATACCGAGAATTTGAAAGGCAAAACATGCATAAGATTCTAGATGACTATCTTCTTATCTGTCAAAGGATGGGGGTTCAAGCAGAGAAACTGTATACTGAAATGGACAACATTGAAAAAGGAATTTTAGAACTCATATCGCAGTACAATATTCGAATGCTTGTTATGGGAGCAGCATCTGATAAGAACTATTCTCGGAGAATGATGGACCTCAGATCTAAGAAAGCTATCTATGTATGTGAACAAGCACCAGCTTCTTGTCATATTTGGTTTATCTGCAAAGGGCACCTTATACAGACAAGGGAACACAGTTTGGATGAAGGTAATGTAGAGGCTGCATCTCCTTTAGTGCAGAAAGTGCCAAACTCTGAAGCTGAGCATTCTCTAAACTTAAGATCTCAATCTTATGCACTGGTGCAAAATCATGGGGCAAATCTAACAAATCCTACTCGAGAATTATTTCGAAGAGTAAAGTCCGCTAATGATCAACATGGAGGGAGTATTTTGGATGCTTCTTTTCAAGATGACACTGAAGGGTATTCGAGTTCATGTAACCAGATGGGTGCAGAAGTATGTTGCGATGAGTCAAATTGGCTGTCAAAGAGGAGTCATTCAGGTTTATCAACGTGCCCTGACAGCACTGCAGTTGAGCCAGCATTGACCCCAAAGTTGATTACCGAGGATGGTGGAATGAATGATACTTTGTATGATCAACATGAACAAGCTAAGGCTGAGGCCGAGAATGCTACGCGAAATGCATATCAAGAAACTTTCATACATGGGAAAACCGAAAAAGATGTTTTGGATACTATACACATGGTTAAAGCCTCTGGAAGCTTATATTTAAAGGAATTGGACCTGAGGAAATCGGCCGAGGAAGAACTAGCAAAAGAAATAGAAGAACTTGATAATATGAAAAACCAGACAGACAAGGTTAAGGAAGAACTCCAACTTGCCCTTGATCAGAAGTCATCGCTAGAGAGTCAAATTTCATCATCTGAACTTATGATAAAGGAGTTGGAGCAGAAGATTATTTCCGCTGTCGATCTGTTACAAAGCTACAAGAATGACCGAGATGAGTTGCAGATGCAGCACGATAGTGCATTGAGAGAGGCCGAGGAGTTGAGAGGAAAACAAGGAGAGACCCTAAGAATGCATGTGTCTAAACTGTTCTCAGAGTTCTCTTTTTCAGAGATTGAGGAAGCAACAAGTAACTTCAACCCATCCCTAAAAATCGGAGAAGGAGGATATGGAAGTATATTTAAAGGAATCCTGCATCATACAGAGGTGGCTATAAAATTGTTGCACCAAAACAGCATGCAAGGACCCTTGGAGTTTCAACAAGAGGTTGATGTATTGAGCAAGATAAGGCATCCCAATCTTATCACACTTATAGGAGCCTGCCCTGAAACCTGCACTCTTGTCTATGAGTATTTACCCAACGGAAGTCTTGAAGATCGTCTCGCTTGCAAGGACAACACACCTCCATTATCATGGCAAACTCGAATTCGCATTGCTGCAGAACTATGTTCTGCTCTTATCTTTCTCCATTCCAGTAAACCTCACAGCATAGTGCATGGCGACCTAAAACCATCCAATATTCTCCTTGATGCAAACCTTATCAGCAAGCTTAGTGACTTTGGAATCTGTCACATATTATCTCGTCACGAGATTTCTAGCAACAATACAACACCGTTTAGGAGAGCTGATCCAAAGGGAACTTTCGCCTACATGGATCCTCAATTCCTTGCTTCGGGGGAATTAACTCCGAAGTCGGATGTTTATTCATTTGGCATTATATTGTTGAGATTGTTGACTGGTAGAGAACCCTTAGGAATAACAGAGGAAGTGAAGTATGCATTAGATACTGGAAAATTAAACTCCCTCTTGGATCCTTTGGCCGGAGACTGGCCATTTGTGAAGGCGGAACAGTTGACTCGCTTGGCTTTGAGGTGTTGCGAGATGAATAGAAAGAGTCGGCCGGACCTTCATTCCGATGTGTGGAGGACACTAGAACCAATGAGGGTTTCTTCTGGAGGTACAAATTCATTTGGACTATGTTCTGAAAGATATTACCAACCTCCATATTTTGTTTGTCCAATTTTTCAGGAAGTGATGCAAGATCCACATGTAGCTGCAGATGGTTTTACTTATGAAGCTGAGGCTATAAGAGGATGGCTTGACAGTGGTCATGACACTTCACCAATGACAAATTCTACTCTTACAAATCACAATCTAGTTCCCAACCATGCTCTTCGTTCTTCAATCCAGGACTGGCTTCAAGCGCGCTCATAA 2535 0.413 MVMVNPVPEIGENLTPSMVEESLYIAVSKDVKENKLNLIWAIQNSGRKRICILHVHVPPTVNPLIGAKFPPGSSKEQEFRAYREFERQNMHKILDDYLLICQRMGVQAEKLYTEMDNIEKGILELISQYNIRMLVMGAASDKNYSRRMMDLRSKKAIYVCEQAPASCHIWFICKGHLIQTREHSLDEGNVEAASPLVQKVPNSEAEHSLNLRSQSYALVQNHGANLTNPTRELFRRVKSANDQHGGSILDASFQDDTEGYSSSCNQMGAEVCCDESNWLSKRSHSGLSTCPDSTAVEPALTPKLITEDGGMNDTLYDQHEQAKAEAENATRNAYQETFIHGKTEKDVLDTIHMVKASGSLYLKELDLRKSAEEELAKEIEELDNMKNQTDKVKEELQLALDQKSSLESQISSSELMIKELEQKIISAVDLLQSYKNDRDELQMQHDSALREAEELRGKQGETLRMHVSKLFSEFSFSEIEEATSNFNPSLKIGEGGYGSIFKGILHHTEVAIKLLHQNSMQGPLEFQQEVDVLSKIRHPNLITLIGACPETCTLVYEYLPNGSLEDRLACKDNTPPLSWQTRIRIAAELCSALIFLHSSKPHSIVHGDLKPSNILLDANLISKLSDFGICHILSRHEISSNNTTPFRRADPKGTFAYMDPQFLASGELTPKSDVYSFGIILLRLLTGREPLGITEEVKYALDTGKLNSLLDPLAGDWPFVKAEQLTRLALRCCEMNRKSRPDLHSDVWRTLEPMRVSSGGTNSFGLCSERYYQPPYFVCPIFQEVMQDPHVAADGFTYEAEAIRGWLDSGHDTSPMTNSTLTNHNLVPNHALRSSIQDWLQARS 844
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal9g1423 844 CDD STK_N 24 175 - -
Lal9g1423 844 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 773 844 IPR013083 -
Lal9g1423 844 SMART serkin_6 486 754 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lal9g1423 844 CDD RING-Ubox_WDSUB1_like 777 818 - -
Lal9g1423 844 PANTHER U-BOX KINASE FAMILY PROTEIN 17 842 - -
Lal9g1423 844 SMART Ubox_2 776 839 IPR003613 GO:0004842|GO:0016567
Lal9g1423 844 Gene3D Phosphorylase Kinase; domain 1 457 558 - -
Lal9g1423 844 PANTHER OS02G0152300 PROTEIN 17 842 - -
Lal9g1423 844 Pfam Protein kinase domain 490 743 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lal9g1423 844 ProSiteProfiles Protein kinase domain profile. 486 755 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lal9g1423 844 SUPERFAMILY RING/U-box 773 843 - -
Lal9g1423 844 Gene3D Transferase(Phosphotransferase) domain 1 559 762 - -
Lal9g1423 844 Gene3D HUPs 17 149 IPR014729 -
Lal9g1423 844 Coils Coil 312 336 - -
Lal9g1423 844 SUPERFAMILY Adenine nucleotide alpha hydrolases-like 48 147 - -
Lal9g1423 844 Coils Coil 362 458 - -
Lal9g1423 844 SUPERFAMILY Protein kinase-like (PK-like) 465 744 IPR011009 -
Lal9g1423 844 Pfam U-box domain 774 843 IPR003613 GO:0004842|GO:0016567
Lal9g1423 844 ProSitePatterns Protein kinases ATP-binding region signature. 492 513 IPR017441 GO:0005524
Lal9g1423 844 ProSiteProfiles U-box domain profile. 772 844 IPR003613 GO:0004842|GO:0016567
Lal9g1423 844 ProSitePatterns Serine/Threonine protein kinases active-site signature. 604 616 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal9g1423 Lal-Chr9 16111678 16119192 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal9g1423 1 841 U-box Gene Family AT2G45910 52.975 0.0 900
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-IXb Lal9g1423 Pkinase 3e-41 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal9g1423 - - gmx:100807515 1201.04
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal9g1423 9 16111678 16119192 Lal9g1423 9 16111678 16119192 ECH
Lal9g1423 9 16111678 16119192 Lal6g0964 6 6804571 6810148 LSH