Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal9g1410 ATGATACCCATCAAAATTTCATTTTTAATCTCAGATTTTGTCTCAATCGCAACCCCATTTGAAGAAATCATCATTTCTCGTGGGATGAATAATAGAGCGAGATATCCACCTGGGATAGGGTTAGGTCGAGGTGGTGGCAGTGGTGGTGGCGGCGGCGGTGGTGGTAGTGGTTTGAACCCGAATCCCGGGTTTCAACAAAGGCCACCTCAACAACATGTTCAGAGGCACATAATGCAGCAACAACAGTATCAGCAACAACAACAACAACAACAACAACAACAACAACAACAATGGCTGAGAAGGACTCAGTTGGGTGGTAGTGCTAACACCAATGTGGTTGAAGAAGTGGAGAAGACTGTACAGTCTGAAGCCGTCGACGAAAGTTCACAAGATTGGAAGACGAAACTAAAAATTCCACCTGCTGATACACGCTATAGGACAGAGGACGTGACAGCAACTAAAGGAAATGAATTCGAGGATTACTTTTTGAAGCGTGAGCTGCTCATGGGAATATATGAGAAGGGTTTTGAAAGACCTTCTCCTATCCAAGAAGAGAGCATTCCAATTGCTCTCACTGGTAGTGACATTCTTGCTAGGGCTAAAAATGGAACTGGCAAAACAGCTGCATTTTGTATTCCAGCATTGGAAAAAATTGACCAGGATAACAATGTTATTCAAGTTGTTATACTGGTCCCAACACGAGAGTTGGCTTTGCAAACCTCTCAAGTGTGTAAAGAGCTTGGAAAGCATTTGAAAATCCAAGTTATGGTTACAACAGGTGGTACCAGCCTGAAAGATGATATTATGCGTTTATATCAACCAGTTCATTTACTAGTTGGAACTCCAGGGAGAATATTAGATCTTGCAAGGAAGGGTGTTTGCGTTATGAAAGACTGCTCCATGCTTGTTATGGATGAGGCTGATAAACTTCTGTCCCCGGAGTTCCAACCTTCAATAGAGCAGCTGATTCAATTTCTTCCTGGAAACCGTCAAATCCTGATGTTTTCAGCAACCTTTCCTGTTACTGTAAAGGACTTCAAAGATAGATACCTTCGTAAGCCATATGTCATTAACCTTATGGATGAGCTAACTCTGAAAGGTATTACGCAATTTTATGCATTTGTGGAAGAGAGGCAGAAAGTTCACTGCCTAAATACACTCTTCTCTAAGCTGCAAATCAACCAGTCAATCATCTTCTGCAATTCGGTGAATCGGGTTGAACTCCTTGCCAAGAAAATCACAGAACTTGGGTATTCATGTTTCTATATTCATGCAAAGATGTTGCAAGACCACCGCAATAGAGTATTTCATGATTTCCGCAATGGCGCGTGCAGGAATCTTGTTTGTACTGATCTTTTCACTAGGGGAATAGATATCCAAGCAGTCAATGTTGTTATTAATTTTGATTTTCCGAAGAACTCAGAAACTTATCTTCACAGGGTTGGTCGGTCGGGGAGGTTTGGGCACCTTGGTTTAGCAGTGAACTTGATCACTTATGAGGACCGCTTCAATTTATATAGGATTGAACAAGAACTTGGTACTGAAATAAAACAAATTCCGCCACACATCGATCAGGCAATATATTGTCATTTAGCTTCAAGTGCTGCTTTCTGA 1614 0.4164 MIPIKISFLISDFVSIATPFEEIIISRGMNNRARYPPGIGLGRGGGSGGGGGGGGSGLNPNPGFQQRPPQQHVQRHIMQQQQYQQQQQQQQQQQQQQWLRRTQLGGSANTNVVEEVEKTVQSEAVDESSQDWKTKLKIPPADTRYRTEDVTATKGNEFEDYFLKRELLMGIYEKGFERPSPIQEESIPIALTGSDILARAKNGTGKTAAFCIPALEKIDQDNNVIQVVILVPTRELALQTSQVCKELGKHLKIQVMVTTGGTSLKDDIMRLYQPVHLLVGTPGRILDLARKGVCVMKDCSMLVMDEADKLLSPEFQPSIEQLIQFLPGNRQILMFSATFPVTVKDFKDRYLRKPYVINLMDELTLKGITQFYAFVEERQKVHCLNTLFSKLQINQSIIFCNSVNRVELLAKKITELGYSCFYIHAKMLQDHRNRVFHDFRNGACRNLVCTDLFTRGIDIQAVNVVINFDFPKNSETYLHRVGRSGRFGHLGLAVNLITYEDRFNLYRIEQELGTEIKQIPPHIDQAIYCHLASSAAF 537
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal9g1410 537 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 226 510 IPR027417 -
Lal9g1410 537 CDD DEADc_DDX6 158 358 - -
Lal9g1410 537 Gene3D - 361 534 IPR027417 -
Lal9g1410 537 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 303 311 IPR000629 -
Lal9g1410 537 Pfam Helicase conserved C-terminal domain 382 488 IPR001650 -
Lal9g1410 537 Gene3D - 111 360 IPR027417 -
Lal9g1410 537 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 156 184 IPR014014 GO:0003724
Lal9g1410 537 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 187 357 IPR014001 -
Lal9g1410 537 CDD SF2_C_DEAD 368 497 - -
Lal9g1410 537 Pfam DEAD/DEAH box helicase 181 345 IPR011545 GO:0003676|GO:0005524
Lal9g1410 537 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 12 31 529 - -
Lal9g1410 537 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 50 31 529 - -
Lal9g1410 537 MobiDBLite consensus disorder prediction 38 71 - -
Lal9g1410 537 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 367 527 IPR001650 -
Lal9g1410 537 SMART helicmild6 407 488 IPR001650 -
Lal9g1410 537 SMART ultradead3 175 371 IPR014001 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal9g1410 Lal-Chr9 15878014 15886586 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal9g1410 158 527 Eukaryotic Initiation Factors Gene Family AT3G19760 38.172 1.01e-93 290
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal9g1410 K12614 - fve:101307921 857.44
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal9g1410 9 15878014 15886586 Lal6g0944 6 6575617 6582164 LSH