Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Lal9g1405 ATGTCATTCACTGGAACTCTTGATAAATGTAAGGCTTGTGATAAGACTGTTTATGTGGTTGACTTGTTAACTCTTGAAGGTATACCTTACCATAAAAACTGCTTCAAATGTAGTCATTGCAAGGGATATCTTACGATGAGCACCTATTCCTCAATGGATGGTGTCCTTTATTGCAAGCCGCACTTCGAACAACTTTTTAAGGAATCTGGAAATTTCAGCAAGAACTTTCAAACAGCAAAGTCTTCTGATAAACAGAATGATATGAATAAGGCTCCACCAAGTAGAGTCTCATCTATGTTCAGTGGAACTCTAGACAAATGCTCGGTTTGCTCAAAAACAGTTTATCCACTTGAAAAGATGACACTGGAAGGGGAATGCTACCACAAGACATGCTTTAGGTGTGCTCATGCAGGTTGTCCTCTCACACATTCCTCCTATGCTGCCCTTGATGGTGTCCTCTATTGTAGGCACCATTTTGCACAGCTTTTCATGGAGAAGGGAAATTACAACCATGTCCTTCAAGCTGCTCAAGCACATAAAAAGAATTCTACTCCACCTCCTGAACCTGTTGATGATGAGTCCTCAAAACAGCCACAAGAACCTGAGGAAAAGAAAGATGAAGACTCTTGA 630 0.4079 MSFTGTLDKCKACDKTVYVVDLLTLEGIPYHKNCFKCSHCKGYLTMSTYSSMDGVLYCKPHFEQLFKESGNFSKNFQTAKSSDKQNDMNKAPPSRVSSMFSGTLDKCSVCSKTVYPLEKMTLEGECYHKTCFRCAHAGCPLTHSSYAALDGVLYCRHHFAQLFMEKGNYNHVLQAAQAHKKNSTPPPEPVDDESSKQPQEPEEKKDEDS 209
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Lal9g1405 209 MobiDBLite consensus disorder prediction 176 209 - -
Lal9g1405 209 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 133 173 - -
Lal9g1405 209 MobiDBLite consensus disorder prediction 193 209 - -
Lal9g1405 209 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 3 35 - -
Lal9g1405 209 ProSiteProfiles LIM domain profile. 105 165 IPR001781 -
Lal9g1405 209 ProSitePatterns LIM zinc-binding domain signature. 10 44 IPR001781 -
Lal9g1405 209 Gene3D Cysteine Rich Protein 103 171 - -
Lal9g1405 209 ProSiteProfiles LIM domain profile. 8 68 IPR001781 -
Lal9g1405 209 PANTHER GATA TYPE ZINC FINGER TRANSCRIPTION FACTOR FAMILY PROTEIN 1 207 - -
Lal9g1405 209 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 36 76 - -
Lal9g1405 209 Pfam LIM domain 107 162 IPR001781 -
Lal9g1405 209 Pfam LIM domain 10 65 IPR001781 -
Lal9g1405 209 PANTHER OS06G0237300 PROTEIN 1 207 IPR045268 GO:0051015
Lal9g1405 209 Gene3D Cysteine Rich Protein 5 72 - -
Lal9g1405 209 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 99 132 - -
Lal9g1405 209 CDD LIM1_SF3 6 68 - -
Lal9g1405 209 SMART lim_4 9 61 IPR001781 -
Lal9g1405 209 SMART lim_4 106 158 IPR001781 -
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Lal9g1405 Lal-Chr9 15814978 15817874 Wgd
       

Transcription factors information


Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LIM Lal9g1405 LIM 3.2e-10 CL0167
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal9g1405 - K09377 gmx:100779513 361.688
       

Event-related genes


Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal9g1405 9 15814978 15817874 Lal9g1405 9 15814978 15817874 ECH
Lal9g1405 9 15814978 15817874 Lal1g2023 1 22367185 22369792 LSH
Lal9g1405 9 15814978 15817874 Lal6g0940 6 6552340 6553878 PCT
Lal9g1405 9 15814978 15817874 Lal22g0820 22 6128485 6130193 PCT
Lal9g1405 9 15814978 15817874 Lal18g0778 18 9625455 9626859 PCT
Lal6g0940 6 6552340 6553878 Lal9g1405 9 15814978 15817874 PCT
Lal22g0820 22 6128485 6130193 Lal9g1405 9 15814978 15817874 PCT
Lal18g0778 18 9625455 9626859 Lal9g1405 9 15814978 15817874 PCT