Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lal9g1405 | ATGTCATTCACTGGAACTCTTGATAAATGTAAGGCTTGTGATAAGACTGTTTATGTGGTTGACTTGTTAACTCTTGAAGGTATACCTTACCATAAAAACTGCTTCAAATGTAGTCATTGCAAGGGATATCTTACGATGAGCACCTATTCCTCAATGGATGGTGTCCTTTATTGCAAGCCGCACTTCGAACAACTTTTTAAGGAATCTGGAAATTTCAGCAAGAACTTTCAAACAGCAAAGTCTTCTGATAAACAGAATGATATGAATAAGGCTCCACCAAGTAGAGTCTCATCTATGTTCAGTGGAACTCTAGACAAATGCTCGGTTTGCTCAAAAACAGTTTATCCACTTGAAAAGATGACACTGGAAGGGGAATGCTACCACAAGACATGCTTTAGGTGTGCTCATGCAGGTTGTCCTCTCACACATTCCTCCTATGCTGCCCTTGATGGTGTCCTCTATTGTAGGCACCATTTTGCACAGCTTTTCATGGAGAAGGGAAATTACAACCATGTCCTTCAAGCTGCTCAAGCACATAAAAAGAATTCTACTCCACCTCCTGAACCTGTTGATGATGAGTCCTCAAAACAGCCACAAGAACCTGAGGAAAAGAAAGATGAAGACTCTTGA | 630 | 0.4079 | MSFTGTLDKCKACDKTVYVVDLLTLEGIPYHKNCFKCSHCKGYLTMSTYSSMDGVLYCKPHFEQLFKESGNFSKNFQTAKSSDKQNDMNKAPPSRVSSMFSGTLDKCSVCSKTVYPLEKMTLEGECYHKTCFRCAHAGCPLTHSSYAALDGVLYCRHHFAQLFMEKGNYNHVLQAAQAHKKNSTPPPEPVDDESSKQPQEPEEKKDEDS | 209 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lal9g1405 | 209 | MobiDBLite | consensus disorder prediction | 176 | 209 | - | - | |
Lal9g1405 | 209 | SUPERFAMILY | Glucocorticoid receptor-like (DNA-binding domain) | 133 | 173 | - | - | |
Lal9g1405 | 209 | MobiDBLite | consensus disorder prediction | 193 | 209 | - | - | |
Lal9g1405 | 209 | SUPERFAMILY | Glucocorticoid receptor-like (DNA-binding domain) | 3 | 35 | - | - | |
Lal9g1405 | 209 | ProSiteProfiles | LIM domain profile. | 105 | 165 | IPR001781 | - | |
Lal9g1405 | 209 | ProSitePatterns | LIM zinc-binding domain signature. | 10 | 44 | IPR001781 | - | |
Lal9g1405 | 209 | Gene3D | Cysteine Rich Protein | 103 | 171 | - | - | |
Lal9g1405 | 209 | ProSiteProfiles | LIM domain profile. | 8 | 68 | IPR001781 | - | |
Lal9g1405 | 209 | PANTHER | GATA TYPE ZINC FINGER TRANSCRIPTION FACTOR FAMILY PROTEIN | 1 | 207 | - | - | |
Lal9g1405 | 209 | SUPERFAMILY | Glucocorticoid receptor-like (DNA-binding domain) | 36 | 76 | - | - | |
Lal9g1405 | 209 | Pfam | LIM domain | 107 | 162 | IPR001781 | - | |
Lal9g1405 | 209 | Pfam | LIM domain | 10 | 65 | IPR001781 | - | |
Lal9g1405 | 209 | PANTHER | OS06G0237300 PROTEIN | 1 | 207 | IPR045268 | GO:0051015 | |
Lal9g1405 | 209 | Gene3D | Cysteine Rich Protein | 5 | 72 | - | - | |
Lal9g1405 | 209 | SUPERFAMILY | Glucocorticoid receptor-like (DNA-binding domain) | 99 | 132 | - | - | |
Lal9g1405 | 209 | CDD | LIM1_SF3 | 6 | 68 | - | - | |
Lal9g1405 | 209 | SMART | lim_4 | 9 | 61 | IPR001781 | - | |
Lal9g1405 | 209 | SMART | lim_4 | 106 | 158 | IPR001781 | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Lal9g1405 | Lal-Chr9 | 15814978 | 15817874 | Wgd |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
TF | LIM | Lal9g1405 | LIM | 3.2e-10 | CL0167 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Lal9g1405 | - | K09377 | gmx:100779513 | 361.688 |
Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
---|---|---|---|---|---|---|---|---|---|
Lal9g1405 | 9 | 15814978 | 15817874 | Lal9g1405 | 9 | 15814978 | 15817874 | ECH | |
Lal9g1405 | 9 | 15814978 | 15817874 | Lal1g2023 | 1 | 22367185 | 22369792 | LSH | |
Lal9g1405 | 9 | 15814978 | 15817874 | Lal6g0940 | 6 | 6552340 | 6553878 | PCT | |
Lal9g1405 | 9 | 15814978 | 15817874 | Lal22g0820 | 22 | 6128485 | 6130193 | PCT | |
Lal9g1405 | 9 | 15814978 | 15817874 | Lal18g0778 | 18 | 9625455 | 9626859 | PCT | |
Lal6g0940 | 6 | 6552340 | 6553878 | Lal9g1405 | 9 | 15814978 | 15817874 | PCT | |
Lal22g0820 | 22 | 6128485 | 6130193 | Lal9g1405 | 9 | 15814978 | 15817874 | PCT | |
Lal18g0778 | 18 | 9625455 | 9626859 | Lal9g1405 | 9 | 15814978 | 15817874 | PCT |