LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lal9g1405	ATGTCATTCACTGGAACTCTTGATAAATGTAAGGCTTGTGATAAGACTGTTTATGTGGTTGACTTGTTAACTCTTGAAGGTATACCTTACCATAAAAACTGCTTCAAATGTAGTCATTGCAAGGGATATCTTACGATGAGCACCTATTCCTCAATGGATGGTGTCCTTTATTGCAAGCCGCACTTCGAACAACTTTTTAAGGAATCTGGAAATTTCAGCAAGAACTTTCAAACAGCAAAGTCTTCTGATAAACAGAATGATATGAATAAGGCTCCACCAAGTAGAGTCTCATCTATGTTCAGTGGAACTCTAGACAAATGCTCGGTTTGCTCAAAAACAGTTTATCCACTTGAAAAGATGACACTGGAAGGGGAATGCTACCACAAGACATGCTTTAGGTGTGCTCATGCAGGTTGTCCTCTCACACATTCCTCCTATGCTGCCCTTGATGGTGTCCTCTATTGTAGGCACCATTTTGCACAGCTTTTCATGGAGAAGGGAAATTACAACCATGTCCTTCAAGCTGCTCAAGCACATAAAAAGAATTCTACTCCACCTCCTGAACCTGTTGATGATGAGTCCTCAAAACAGCCACAAGAACCTGAGGAAAAGAAAGATGAAGACTCTTGA	630	0.4079	MSFTGTLDKCKACDKTVYVVDLLTLEGIPYHKNCFKCSHCKGYLTMSTYSSMDGVLYCKPHFEQLFKESGNFSKNFQTAKSSDKQNDMNKAPPSRVSSMFSGTLDKCSVCSKTVYPLEKMTLEGECYHKTCFRCAHAGCPLTHSSYAALDGVLYCRHHFAQLFMEKGNYNHVLQAAQAHKKNSTPPPEPVDDESSKQPQEPEEKKDEDS	209

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Lal9g1405	209	MobiDBLite	consensus disorder prediction	176	209	-	-
	Lal9g1405	209	SUPERFAMILY	Glucocorticoid receptor-like (DNA-binding domain)	133	173	-	-
	Lal9g1405	209	MobiDBLite	consensus disorder prediction	193	209	-	-
	Lal9g1405	209	SUPERFAMILY	Glucocorticoid receptor-like (DNA-binding domain)	3	35	-	-
	Lal9g1405	209	ProSiteProfiles	LIM domain profile.	105	165	IPR001781	-
	Lal9g1405	209	ProSitePatterns	LIM zinc-binding domain signature.	10	44	IPR001781	-
	Lal9g1405	209	Gene3D	Cysteine Rich Protein	103	171	-	-
	Lal9g1405	209	ProSiteProfiles	LIM domain profile.	8	68	IPR001781	-
	Lal9g1405	209	PANTHER	GATA TYPE ZINC FINGER TRANSCRIPTION FACTOR FAMILY PROTEIN	1	207	-	-
	Lal9g1405	209	SUPERFAMILY	Glucocorticoid receptor-like (DNA-binding domain)	36	76	-	-
	Lal9g1405	209	Pfam	LIM domain	107	162	IPR001781	-
	Lal9g1405	209	Pfam	LIM domain	10	65	IPR001781	-
	Lal9g1405	209	PANTHER	OS06G0237300 PROTEIN	1	207	IPR045268	GO:0051015
	Lal9g1405	209	Gene3D	Cysteine Rich Protein	5	72	-	-
	Lal9g1405	209	SUPERFAMILY	Glucocorticoid receptor-like (DNA-binding domain)	99	132	-	-
	Lal9g1405	209	CDD	LIM1_SF3	6	68	-	-
	Lal9g1405	209	SMART	lim_4	9	61	IPR001781	-
	Lal9g1405	209	SMART	lim_4	106	158	IPR001781	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Lal9g1405	Lal-Chr9	15814978	15817874	Wgd

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	LIM	Lal9g1405		LIM	3.2e-10	CL0167

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Lal9g1405	-		K09377	gmx:100779513	361.688

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Lal9g1405	9	15814978	15817874	Lal9g1405	9	15814978	15817874	ECH
	Lal9g1405	9	15814978	15817874	Lal1g2023	1	22367185	22369792	LSH
	Lal9g1405	9	15814978	15817874	Lal6g0940	6	6552340	6553878	PCT
	Lal9g1405	9	15814978	15817874	Lal22g0820	22	6128485	6130193	PCT
	Lal9g1405	9	15814978	15817874	Lal18g0778	18	9625455	9626859	PCT
	Lal6g0940	6	6552340	6553878	Lal9g1405	9	15814978	15817874	PCT
	Lal22g0820	22	6128485	6130193	Lal9g1405	9	15814978	15817874	PCT
	Lal18g0778	18	9625455	9626859	Lal9g1405	9	15814978	15817874	PCT