Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Lal9g1398 ATGGATATGGCTTGTAGCTTAACACAGTCAAGAATGTTACATGGAGGTGTGGTAGGGTATAGTAACAGACACAACATATCACTAGGTCATTTTGATTCCAGAGCGAGATGTTTTTTGACTAGTGTTTCGAAGTTGCGATTTGCTGGGAGGAGCAGAGTTAGTGGTGTTTCTGTTGGGGAGTTTAATGTTCGGAATTCGAAGAGAACGTTGTCTTGTAGAAATAATAAGAATAATATTCTTTTATTGGGGTCTAGAGTAGTTTGGTCAAAGTGCCAGGGTAGTGATTCTTTAGCATATGTTGATGGCGATGGCCGGAAAGTTGATTGTGTGGAAGGTTCGGGTGAGGACTCGGGGTTGGGGTCTGTTTCGGGTGCTGAACTGGATGCACCATTGGAAGATGAAGAAGAAGGGGAGAAGGAAGGAGTCGAGGACCAAAATGTGGTTGAACTGCAAGAAGCATTGCAAACTGCTTTGAAGGAGCTAGAAGTTGCACAAGTAAATAGTACCATGTTTGAAGAAAAGGTTAAAAGAATATCAGAGACTGCCATTTCTTTGCATGATGAAGCAGAAAGTGCTTGGAATGATGTTAATTCTGCTATTAACACCGTCCAAGAAATTGCTAATGAAGAACAAATTGCCAAAGAAGCTGTCCATAATGCAACAATGGCTCTTTCATTAGCCAAGGCAAGGCTTCAAGTAGACTTAGAATCTTCGGAGGCTACAAAAGAAGTGCATGATACAGATAATGGCATAACAGAAGAGGATAAAGCACTTTTGATTGCTCAAGAAGATGCCAAGGAATGCCAGACAAAATTAGCCACTTGTGAGGAAGAGCTGAAGCTCTTGCAAAATAGAAAGGAGGAGTTGCAGAAGGAAGTGGACAGATTGCATGAAATTGCTGAAAAGGCACAACTGAATGCTGTGAAAGCTGAGGAAGATGTTACAAACATCATGCATTTAGCTGAGCAAGCTGTTGCCTTTGAACTTGAGGCTACACAACGTGTAAATGATGCCGAGATTGCCTTACAGCAAGCGGAGAAATCTTTTTCTAATTTTAATGCTGATACAATAGAAACTGTACAAGTTCAAGATGTTCCTGATGTTGAGAAAGTGGTTCAAGGGTCGTCTGCTGATGTCATTGTTGAAAGAGATGGAGATCTGCCAACTGATGATGAATCTTTACTTGCCAAGTTATCACCTGAAACAAAATCTGATAAAACCAGCCAAACATTGGATGACATAACACAGTCTGATTATTTGAGTGATAATGAGAATGCGGTTCAAACAAAAAAGCAGGAAACTCAGAAAGACATGAGTTCACCCTATGCTCCCAAGACATTACTGAAGAAATCTTCTCGATTCTTTTCTGCATCATTCTTCTCTTCTAATGAAGATGGGTCTGAGTTCTCTCCAGAATCCGTTTTCCAGGGCCTCATGTTATCTGCACAGAAACAGTTGCCCAAGCTGGTTCTTGGGTTACTGTTATTGGGAGCAGGGGTCACCTTCTATTTCAATAGAGCAGAGAGGAATACTCAGCTTCTTCAACAGCCAGATGTTATTGTAACCAGTGTTGAAGAAGTTTCCTCTAGTGCTAAACCTCTGATTAGGCAGCTTAAGAAACTCCCTAAGAAAATTAAGAAAATTATTGCGTCACTGCCTCATCAAGAGGTGAATGAGGAAGAAGCCTCTCTCTTTGACATGCTGTGGTTACTACTAGCAAGTGTCATATTTGTGCCAATATTTCAAAAGCTTCCTGGAGGCAGTCCTGTTCTTGGCTACTTGGCTGCTGGTATCTTGATTGGGCCTTATGGTCTCTCTATCATTCGTCATGTTCATGGGACAAAAGCAATTGCTGAATTTGGAGTTGTTTTCCTTTTGTTCAATATTGGCCTAGAGCTCTCTGTAGAAAGGCTTAGTTCAATGAAGAAATATGTCTTCGGATTAGGCTCTGCACAGGTTTTGGTGACTGCTGTAGTTGTTGGCTTGGTGGCTCATTATATCTGTGGCATACCCGGCCCTGCTTCCATTGTCATTGGGAATGGCCTGGCATTGTCATCCACCGCTGTTGTTCTGCAGGTGTTGCAGGAGAGAGGTGAGAGCACATCCCGACATGGGCGAGCTACATTTTCGGTTTTACTTTTTCAGGATTTGGCTGTTGTGGTCTTGCTAATACTCATACCTCTCATTTCACCTAACTCTTCCAAAGGAGGGATTGGATTTCAAGCCATTGCTGAAGCTCTTGGACTGGCAGCTGTTAAGGCAGCAGTTGCCATCACTGCCATAATTGCGGGCGGACGATTGCTCCTTCGACCAATATACAAGCAGGTTGCAGAAAATCAAAATGCAGAAATATTCTCTGCCAATACACTACTTGTTATTCTTGGAACTAGTCTTCTTACAGCCAGGGCAGGACTATCCATGGCACTGGGAGCATTTTTGGCTGGTTTACTACTGGCAGAAACTGAATTTTCCTTACAGGTTGAATCTGATATTGCTCCATATCGTGGCCTTCTATTAGGGCTATTCTTTATGACGGTTGGAATGTCAATTGATCCAAAACTTCTTCTTTCAAACTTCCCAGTCATCACAGGGACACTGGGACTCTTAATATGTGGCAAGACTATCTTGATTTCTTTGATTGGTAGAATCTTTGGAATTTCCCTCATTTCTGCCCTAAGAGTTGGTCTTCTTCTTGCTCCTGGTGGAGAATTTGCATTCGTGGCTTTTGGTGATGCTGTTAATCAGGGCATAATGTCTTCCAAGTTGTCCTCTTTGCTGTTTCTTGTTGTGGGCATTTCAATGGCAATCACGCCATGGCTAGCTGCAGGAGGCCAGCTGATTGCTTCCCGTTTTGAGCAACATGATGTTCGGAGTTTATTACCTGTAGAAAGTGAGACAGATGATCTGCAAGGTCATATCATTATTTGTGGATTTGGACGAGTTGGGCAGATCATTGCCCAACTTCTTTCTGAGCGACTTATTCCTTTTGTTGCACTAGATGTGAGAAGTGATAGAGTGGCAATAGGGAGAGCAATGGATCTTCCTGTATACTTTGGAGATGCTGGTAGTCGAGAGGTCCTACATAAGATTGGTGCTGAAAGGGCATGTGCCGCAGCAATAACTCTAGATACGCCGGGTGCAAATTATAGAACAGTTTGGGCTTTGAGCAAATACTTCCCAAATGTGAAGACTTTTGTTCGTGCTCATGATGTTGATCATGGATTGAATTTAGAAAAGGCTGGAGCTACTGCTGTTGTCCCAGAGACCTTGGAACCAAGTCTTCAACTAGCAGCTGCTGTGCTTGCTCAGGCTAAGCTTCCCACATCGGAGATTGCAGCAACCGTAAATGAATTCAGATCCCGCCATCTGAGTGAGCTCTCAGAGCTTTGTGAAGAAAGTGGAAGTTCTCTTGGTTATGGTTATAATAGAATTATGAGCAAACCCAAATCTCAAACCCCAGATTCATCAGATGAGACCCAATTGTCTCAAGGGACACTTGCAATTTGA 3507 0.4274 MDMACSLTQSRMLHGGVVGYSNRHNISLGHFDSRARCFLTSVSKLRFAGRSRVSGVSVGEFNVRNSKRTLSCRNNKNNILLLGSRVVWSKCQGSDSLAYVDGDGRKVDCVEGSGEDSGLGSVSGAELDAPLEDEEEGEKEGVEDQNVVELQEALQTALKELEVAQVNSTMFEEKVKRISETAISLHDEAESAWNDVNSAINTVQEIANEEQIAKEAVHNATMALSLAKARLQVDLESSEATKEVHDTDNGITEEDKALLIAQEDAKECQTKLATCEEELKLLQNRKEELQKEVDRLHEIAEKAQLNAVKAEEDVTNIMHLAEQAVAFELEATQRVNDAEIALQQAEKSFSNFNADTIETVQVQDVPDVEKVVQGSSADVIVERDGDLPTDDESLLAKLSPETKSDKTSQTLDDITQSDYLSDNENAVQTKKQETQKDMSSPYAPKTLLKKSSRFFSASFFSSNEDGSEFSPESVFQGLMLSAQKQLPKLVLGLLLLGAGVTFYFNRAERNTQLLQQPDVIVTSVEEVSSSAKPLIRQLKKLPKKIKKIIASLPHQEVNEEEASLFDMLWLLLASVIFVPIFQKLPGGSPVLGYLAAGILIGPYGLSIIRHVHGTKAIAEFGVVFLLFNIGLELSVERLSSMKKYVFGLGSAQVLVTAVVVGLVAHYICGIPGPASIVIGNGLALSSTAVVLQVLQERGESTSRHGRATFSVLLFQDLAVVVLLILIPLISPNSSKGGIGFQAIAEALGLAAVKAAVAITAIIAGGRLLLRPIYKQVAENQNAEIFSANTLLVILGTSLLTARAGLSMALGAFLAGLLLAETEFSLQVESDIAPYRGLLLGLFFMTVGMSIDPKLLLSNFPVITGTLGLLICGKTILISLIGRIFGISLISALRVGLLLAPGGEFAFVAFGDAVNQGIMSSKLSSLLFLVVGISMAITPWLAAGGQLIASRFEQHDVRSLLPVESETDDLQGHIIICGFGRVGQIIAQLLSERLIPFVALDVRSDRVAIGRAMDLPVYFGDAGSREVLHKIGAERACAAAITLDTPGANYRTVWALSKYFPNVKTFVRAHDVDHGLNLEKAGATAVVPETLEPSLQLAAAVLAQAKLPTSEIAATVNEFRSRHLSELSELCEESGSSLGYGYNRIMSKPKSQTPDSSDETQLSQGTLAI 1168
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Lal9g1398 1168 Gene3D - 560 948 IPR038770 -
Lal9g1398 1168 PANTHER K(+) EFFLUX ANTIPORTER 3, CHLOROPLASTIC 1 1168 - -
Lal9g1398 1168 MobiDBLite consensus disorder prediction 1145 1168 - -
Lal9g1398 1168 MobiDBLite consensus disorder prediction 128 142 - -
Lal9g1398 1168 Pfam Sodium/hydrogen exchanger family 570 940 IPR006153 GO:0006812|GO:0015299|GO:0016021|GO:0055085
Lal9g1398 1168 Coils Coil 147 167 - -
Lal9g1398 1168 MobiDBLite consensus disorder prediction 111 142 - -
Lal9g1398 1168 Gene3D - 970 1131 - -
Lal9g1398 1168 Pfam TrkA-N domain 973 1086 IPR003148 GO:0006813
Lal9g1398 1168 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 969 1110 IPR036291 -
Lal9g1398 1168 Coils Coil 328 355 - -
Lal9g1398 1168 TIGRFAM 2a37: transporter, monovalent cation:proton antiporter-2 (CPA2) family 571 851 IPR004771 GO:0006812|GO:0008324|GO:0016021
Lal9g1398 1168 MobiDBLite consensus disorder prediction 397 443 - -
Lal9g1398 1168 ProSiteProfiles RCK N-terminal domain profile. 972 1094 IPR003148 GO:0006813
Lal9g1398 1168 PANTHER K(+) EFFLUX ANTIPORTER 1, CHLOROPLASTIC-RELATED 1 1168 - -
Lal9g1398 1168 MobiDBLite consensus disorder prediction 1143 1168 - -
Lal9g1398 1168 Coils Coil 258 313 - -
Lal9g1398 1168 MobiDBLite consensus disorder prediction 400 441 - -
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Lal9g1398 Lal-Chr9 15747867 15766115 Dispersed/Wgd
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal9g1398 1 1168 Inorganic Solute Cotransporters AT4G00630 67.601 0.0 1431
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal9g1398 - - gmx:100798822 1644.02
       

Event-related genes


Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal9g1398 9 15747867 15766115 Lal9g1398 9 15747867 15766115 ECH
Lal9g1398 9 15747867 15766115 Lal6g0939 6 6537374 6550380 LSH
Lal9g1398 9 15747867 15766115 Lal6g0939 6 6537374 6550380 PCT
Lal6g0939 6 6537374 6550380 Lal9g1398 9 15747867 15766115 PCT