LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lal9g1398	ATGGATATGGCTTGTAGCTTAACACAGTCAAGAATGTTACATGGAGGTGTGGTAGGGTATAGTAACAGACACAACATATCACTAGGTCATTTTGATTCCAGAGCGAGATGTTTTTTGACTAGTGTTTCGAAGTTGCGATTTGCTGGGAGGAGCAGAGTTAGTGGTGTTTCTGTTGGGGAGTTTAATGTTCGGAATTCGAAGAGAACGTTGTCTTGTAGAAATAATAAGAATAATATTCTTTTATTGGGGTCTAGAGTAGTTTGGTCAAAGTGCCAGGGTAGTGATTCTTTAGCATATGTTGATGGCGATGGCCGGAAAGTTGATTGTGTGGAAGGTTCGGGTGAGGACTCGGGGTTGGGGTCTGTTTCGGGTGCTGAACTGGATGCACCATTGGAAGATGAAGAAGAAGGGGAGAAGGAAGGAGTCGAGGACCAAAATGTGGTTGAACTGCAAGAAGCATTGCAAACTGCTTTGAAGGAGCTAGAAGTTGCACAAGTAAATAGTACCATGTTTGAAGAAAAGGTTAAAAGAATATCAGAGACTGCCATTTCTTTGCATGATGAAGCAGAAAGTGCTTGGAATGATGTTAATTCTGCTATTAACACCGTCCAAGAAATTGCTAATGAAGAACAAATTGCCAAAGAAGCTGTCCATAATGCAACAATGGCTCTTTCATTAGCCAAGGCAAGGCTTCAAGTAGACTTAGAATCTTCGGAGGCTACAAAAGAAGTGCATGATACAGATAATGGCATAACAGAAGAGGATAAAGCACTTTTGATTGCTCAAGAAGATGCCAAGGAATGCCAGACAAAATTAGCCACTTGTGAGGAAGAGCTGAAGCTCTTGCAAAATAGAAAGGAGGAGTTGCAGAAGGAAGTGGACAGATTGCATGAAATTGCTGAAAAGGCACAACTGAATGCTGTGAAAGCTGAGGAAGATGTTACAAACATCATGCATTTAGCTGAGCAAGCTGTTGCCTTTGAACTTGAGGCTACACAACGTGTAAATGATGCCGAGATTGCCTTACAGCAAGCGGAGAAATCTTTTTCTAATTTTAATGCTGATACAATAGAAACTGTACAAGTTCAAGATGTTCCTGATGTTGAGAAAGTGGTTCAAGGGTCGTCTGCTGATGTCATTGTTGAAAGAGATGGAGATCTGCCAACTGATGATGAATCTTTACTTGCCAAGTTATCACCTGAAACAAAATCTGATAAAACCAGCCAAACATTGGATGACATAACACAGTCTGATTATTTGAGTGATAATGAGAATGCGGTTCAAACAAAAAAGCAGGAAACTCAGAAAGACATGAGTTCACCCTATGCTCCCAAGACATTACTGAAGAAATCTTCTCGATTCTTTTCTGCATCATTCTTCTCTTCTAATGAAGATGGGTCTGAGTTCTCTCCAGAATCCGTTTTCCAGGGCCTCATGTTATCTGCACAGAAACAGTTGCCCAAGCTGGTTCTTGGGTTACTGTTATTGGGAGCAGGGGTCACCTTCTATTTCAATAGAGCAGAGAGGAATACTCAGCTTCTTCAACAGCCAGATGTTATTGTAACCAGTGTTGAAGAAGTTTCCTCTAGTGCTAAACCTCTGATTAGGCAGCTTAAGAAACTCCCTAAGAAAATTAAGAAAATTATTGCGTCACTGCCTCATCAAGAGGTGAATGAGGAAGAAGCCTCTCTCTTTGACATGCTGTGGTTACTACTAGCAAGTGTCATATTTGTGCCAATATTTCAAAAGCTTCCTGGAGGCAGTCCTGTTCTTGGCTACTTGGCTGCTGGTATCTTGATTGGGCCTTATGGTCTCTCTATCATTCGTCATGTTCATGGGACAAAAGCAATTGCTGAATTTGGAGTTGTTTTCCTTTTGTTCAATATTGGCCTAGAGCTCTCTGTAGAAAGGCTTAGTTCAATGAAGAAATATGTCTTCGGATTAGGCTCTGCACAGGTTTTGGTGACTGCTGTAGTTGTTGGCTTGGTGGCTCATTATATCTGTGGCATACCCGGCCCTGCTTCCATTGTCATTGGGAATGGCCTGGCATTGTCATCCACCGCTGTTGTTCTGCAGGTGTTGCAGGAGAGAGGTGAGAGCACATCCCGACATGGGCGAGCTACATTTTCGGTTTTACTTTTTCAGGATTTGGCTGTTGTGGTCTTGCTAATACTCATACCTCTCATTTCACCTAACTCTTCCAAAGGAGGGATTGGATTTCAAGCCATTGCTGAAGCTCTTGGACTGGCAGCTGTTAAGGCAGCAGTTGCCATCACTGCCATAATTGCGGGCGGACGATTGCTCCTTCGACCAATATACAAGCAGGTTGCAGAAAATCAAAATGCAGAAATATTCTCTGCCAATACACTACTTGTTATTCTTGGAACTAGTCTTCTTACAGCCAGGGCAGGACTATCCATGGCACTGGGAGCATTTTTGGCTGGTTTACTACTGGCAGAAACTGAATTTTCCTTACAGGTTGAATCTGATATTGCTCCATATCGTGGCCTTCTATTAGGGCTATTCTTTATGACGGTTGGAATGTCAATTGATCCAAAACTTCTTCTTTCAAACTTCCCAGTCATCACAGGGACACTGGGACTCTTAATATGTGGCAAGACTATCTTGATTTCTTTGATTGGTAGAATCTTTGGAATTTCCCTCATTTCTGCCCTAAGAGTTGGTCTTCTTCTTGCTCCTGGTGGAGAATTTGCATTCGTGGCTTTTGGTGATGCTGTTAATCAGGGCATAATGTCTTCCAAGTTGTCCTCTTTGCTGTTTCTTGTTGTGGGCATTTCAATGGCAATCACGCCATGGCTAGCTGCAGGAGGCCAGCTGATTGCTTCCCGTTTTGAGCAACATGATGTTCGGAGTTTATTACCTGTAGAAAGTGAGACAGATGATCTGCAAGGTCATATCATTATTTGTGGATTTGGACGAGTTGGGCAGATCATTGCCCAACTTCTTTCTGAGCGACTTATTCCTTTTGTTGCACTAGATGTGAGAAGTGATAGAGTGGCAATAGGGAGAGCAATGGATCTTCCTGTATACTTTGGAGATGCTGGTAGTCGAGAGGTCCTACATAAGATTGGTGCTGAAAGGGCATGTGCCGCAGCAATAACTCTAGATACGCCGGGTGCAAATTATAGAACAGTTTGGGCTTTGAGCAAATACTTCCCAAATGTGAAGACTTTTGTTCGTGCTCATGATGTTGATCATGGATTGAATTTAGAAAAGGCTGGAGCTACTGCTGTTGTCCCAGAGACCTTGGAACCAAGTCTTCAACTAGCAGCTGCTGTGCTTGCTCAGGCTAAGCTTCCCACATCGGAGATTGCAGCAACCGTAAATGAATTCAGATCCCGCCATCTGAGTGAGCTCTCAGAGCTTTGTGAAGAAAGTGGAAGTTCTCTTGGTTATGGTTATAATAGAATTATGAGCAAACCCAAATCTCAAACCCCAGATTCATCAGATGAGACCCAATTGTCTCAAGGGACACTTGCAATTTGA	3507	0.4274	MDMACSLTQSRMLHGGVVGYSNRHNISLGHFDSRARCFLTSVSKLRFAGRSRVSGVSVGEFNVRNSKRTLSCRNNKNNILLLGSRVVWSKCQGSDSLAYVDGDGRKVDCVEGSGEDSGLGSVSGAELDAPLEDEEEGEKEGVEDQNVVELQEALQTALKELEVAQVNSTMFEEKVKRISETAISLHDEAESAWNDVNSAINTVQEIANEEQIAKEAVHNATMALSLAKARLQVDLESSEATKEVHDTDNGITEEDKALLIAQEDAKECQTKLATCEEELKLLQNRKEELQKEVDRLHEIAEKAQLNAVKAEEDVTNIMHLAEQAVAFELEATQRVNDAEIALQQAEKSFSNFNADTIETVQVQDVPDVEKVVQGSSADVIVERDGDLPTDDESLLAKLSPETKSDKTSQTLDDITQSDYLSDNENAVQTKKQETQKDMSSPYAPKTLLKKSSRFFSASFFSSNEDGSEFSPESVFQGLMLSAQKQLPKLVLGLLLLGAGVTFYFNRAERNTQLLQQPDVIVTSVEEVSSSAKPLIRQLKKLPKKIKKIIASLPHQEVNEEEASLFDMLWLLLASVIFVPIFQKLPGGSPVLGYLAAGILIGPYGLSIIRHVHGTKAIAEFGVVFLLFNIGLELSVERLSSMKKYVFGLGSAQVLVTAVVVGLVAHYICGIPGPASIVIGNGLALSSTAVVLQVLQERGESTSRHGRATFSVLLFQDLAVVVLLILIPLISPNSSKGGIGFQAIAEALGLAAVKAAVAITAIIAGGRLLLRPIYKQVAENQNAEIFSANTLLVILGTSLLTARAGLSMALGAFLAGLLLAETEFSLQVESDIAPYRGLLLGLFFMTVGMSIDPKLLLSNFPVITGTLGLLICGKTILISLIGRIFGISLISALRVGLLLAPGGEFAFVAFGDAVNQGIMSSKLSSLLFLVVGISMAITPWLAAGGQLIASRFEQHDVRSLLPVESETDDLQGHIIICGFGRVGQIIAQLLSERLIPFVALDVRSDRVAIGRAMDLPVYFGDAGSREVLHKIGAERACAAAITLDTPGANYRTVWALSKYFPNVKTFVRAHDVDHGLNLEKAGATAVVPETLEPSLQLAAAVLAQAKLPTSEIAATVNEFRSRHLSELSELCEESGSSLGYGYNRIMSKPKSQTPDSSDETQLSQGTLAI	1168

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Lal9g1398	1168	Gene3D	-	560	948	IPR038770	-
	Lal9g1398	1168	PANTHER	K(+) EFFLUX ANTIPORTER 3, CHLOROPLASTIC	1	1168	-	-
	Lal9g1398	1168	MobiDBLite	consensus disorder prediction	1145	1168	-	-
	Lal9g1398	1168	MobiDBLite	consensus disorder prediction	128	142	-	-
	Lal9g1398	1168	Pfam	Sodium/hydrogen exchanger family	570	940	IPR006153	GO:0006812\|GO:0015299\|GO:0016021\|GO:0055085
	Lal9g1398	1168	Coils	Coil	147	167	-	-
	Lal9g1398	1168	MobiDBLite	consensus disorder prediction	111	142	-	-
	Lal9g1398	1168	Gene3D	-	970	1131	-	-
	Lal9g1398	1168	Pfam	TrkA-N domain	973	1086	IPR003148	GO:0006813
	Lal9g1398	1168	SUPERFAMILY	NAD(P)-binding Rossmann-fold domains	969	1110	IPR036291	-
	Lal9g1398	1168	Coils	Coil	328	355	-	-
	Lal9g1398	1168	TIGRFAM	2a37: transporter, monovalent cation:proton antiporter-2 (CPA2) family	571	851	IPR004771	GO:0006812\|GO:0008324\|GO:0016021
	Lal9g1398	1168	MobiDBLite	consensus disorder prediction	397	443	-	-
	Lal9g1398	1168	ProSiteProfiles	RCK N-terminal domain profile.	972	1094	IPR003148	GO:0006813
	Lal9g1398	1168	PANTHER	K(+) EFFLUX ANTIPORTER 1, CHLOROPLASTIC-RELATED	1	1168	-	-
	Lal9g1398	1168	MobiDBLite	consensus disorder prediction	1143	1168	-	-
	Lal9g1398	1168	Coils	Coil	258	313	-	-
	Lal9g1398	1168	MobiDBLite	consensus disorder prediction	400	441	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Lal9g1398	Lal-Chr9	15747867	15766115	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Lal9g1398	1	1168	Inorganic Solute Cotransporters	AT4G00630	67.601	0.0	1431

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Lal9g1398	-		-	gmx:100798822	1644.02

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Lal9g1398	9	15747867	15766115	Lal9g1398	9	15747867	15766115	ECH
	Lal9g1398	9	15747867	15766115	Lal6g0939	6	6537374	6550380	LSH
	Lal9g1398	9	15747867	15766115	Lal6g0939	6	6537374	6550380	PCT
	Lal6g0939	6	6537374	6550380	Lal9g1398	9	15747867	15766115	PCT