Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal9g1387 ATGGTGGAAGATGATGTTGCAGTTGATGCACTTTCCACAGATGATTGGTTGTTGCATGCAGAGGAACTTGTTCCTGTTGCTCTTGATAAGGCAAGAGAGGTCAAAGCATTTCCTTGTAAATGGAAGATGATCATTTCAAAATTAGAACAAATCCCATTGCATTTATCGGATTTATCAAGCCACCCTAGTTTCTCAAAGAATGCTCTTTGCGAGGAGCAATTACAGGCCGTGTTGAAGACGCTCGGGGAAGCAATTGGATTGGCTGAGTTGTGTATGAAGGAAAAGAACGAGGGTAAGCTTAAGATGCAAAGTGATCTTGATGCATTAATTGGGAAACTAGAGTTGAACTTAAGGGATTGTGGCCTATTGGTCAAGACTGGTGTCCTCGGCGAGGCTACGTTGCCGTTGGCTGTGTCTTGTCCTGTGGTGGAATCAGATGTTGTAACACACAGCAACGTAAAGGAATTACTGGCGCGGCTTCAGATCGGTCACATGGAATCAAAGCACAAAGCTTTAGACAGTGTAATTGATGTTATGAAAGAAGATGAAAAAAATGTTTTGACAGTACTGGGTAGGAGCAACATTGCTGCTCTAGTTCAGATGCTTACAGCTACATCTCCCCGGATAAGAGAGAAAACGGTTATTGTTATATCCTCGCTCGTAGAATCCGGGAGCTGTGAGAACTGGCTTGTTTCTGAAGGAGTTCTGCCACCTCTTATAAGGCTAGTTGAATCAGGTAGTGCTGTTGGTAAAGAGAAAGCAACAATATCTCTTCAGAGATTATCAATGTCGGAAGAAACAGCTCGTGCAATCGTCGGACATGGTGGGGTATGTCCGTTGATTGGCCTTTGTCAAACTGGCAATTCTGTGTCACAGGCTGCTGCGGCTTCTACTTTGAAGAATATATCAGCCGTTCCGGATTTAAGAAAAGCATTGGATGAAGAAGGGATTGCTCGGGTTATGATCAATCTGCTTAACTGCGGAATTTTGTTGGGTACCAAAGAGTATGCTGCCGAGTGCTTACAGAACCTCACTGCAAGCAATGAGAATTTAAGGAGGGCTATTATATTGGAAGGAGGTGTTAGAAGTCTTTTGGCTTATCTAGACGGTCCGCTTCCTCAAGAATCCGCAGTTGGAGCATTGAGGAATTTGGTTGGATCAGTTTCCGAGGATACTTTGGTTTCGCTAGGTGTCCTCCCACGTCTAGCTCATGTTCTAAAGTCTGGATCCTTAGGTGCTCAACTAGCTGCCGCGTCTGCAATCTGCCGGATTTGCAGCTCAAACACGATCAAGAAAATGGTTGGTGAAGCAGGATGCATCCCTCTCCTTGTCATGATGCTTGAGTCTAAATCAAACAATGCTAGAGAGGCTGCTGCACAAGCAATTGCAAGCTTGATGATTCTTTCGCTGAACCGCCGAGAAGTTAAGAAGAACGATAAAAGTGTCCCGAACCTTGTTCAATTGCTTGATCCAAGTCCTCATAACACTGCCAAAAAGTATGCAATTTCATGCCTTGGATTACTTTGTTCAAGTAAGAAATGTAAGAAGTTGATGATCTCATATGGAGCAATTGGGTATCTGAAGAAACTTACAGATATGAACATTCCGGGAGCGAAAAAGTTACAGGATCGATTCGAAAGAGGGAAATTAAGTTTATTTTGCAAGAAATAG 1671 0.4339 MVEDDVAVDALSTDDWLLHAEELVPVALDKAREVKAFPCKWKMIISKLEQIPLHLSDLSSHPSFSKNALCEEQLQAVLKTLGEAIGLAELCMKEKNEGKLKMQSDLDALIGKLELNLRDCGLLVKTGVLGEATLPLAVSCPVVESDVVTHSNVKELLARLQIGHMESKHKALDSVIDVMKEDEKNVLTVLGRSNIAALVQMLTATSPRIREKTVIVISSLVESGSCENWLVSEGVLPPLIRLVESGSAVGKEKATISLQRLSMSEETARAIVGHGGVCPLIGLCQTGNSVSQAAAASTLKNISAVPDLRKALDEEGIARVMINLLNCGILLGTKEYAAECLQNLTASNENLRRAIILEGGVRSLLAYLDGPLPQESAVGALRNLVGSVSEDTLVSLGVLPRLAHVLKSGSLGAQLAAASAICRICSSNTIKKMVGEAGCIPLLVMMLESKSNNAREAAAQAIASLMILSLNRREVKKNDKSVPNLVQLLDPSPHNTAKKYAISCLGLLCSSKKCKKLMISYGAIGYLKKLTDMNIPGAKKLQDRFERGKLSLFCKK 556
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal9g1387 556 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 234 276 IPR000225 GO:0005515
Lal9g1387 556 PANTHER ARMADILLO/BETA-CATENIN-LIKE REPEAT PROTEIN 3 556 - -
Lal9g1387 556 SUPERFAMILY ARM repeat 152 531 IPR016024 -
Lal9g1387 556 Pfam Armadillo/beta-catenin-like repeat 391 426 IPR000225 GO:0005515
Lal9g1387 556 Pfam Armadillo/beta-catenin-like repeat 431 465 IPR000225 GO:0005515
Lal9g1387 556 PANTHER ARM REPEAT SUPERFAMILY PROTEIN 3 556 - -
Lal9g1387 556 Gene3D - 371 447 IPR011989 -
Lal9g1387 556 Gene3D - 144 369 IPR011989 -
Lal9g1387 556 Gene3D - 448 540 IPR011989 -
Lal9g1387 556 SMART arm_5 264 304 IPR000225 GO:0005515
Lal9g1387 556 SMART arm_5 387 426 IPR000225 GO:0005515
Lal9g1387 556 SMART arm_5 182 222 IPR000225 GO:0005515
Lal9g1387 556 SMART arm_5 427 467 IPR000225 GO:0005515
Lal9g1387 556 SMART arm_5 468 510 IPR000225 GO:0005515
Lal9g1387 556 SMART arm_5 305 346 IPR000225 GO:0005515
Lal9g1387 556 SMART arm_5 347 386 IPR000225 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal9g1387 Lal-Chr9 15587376 15589046 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal9g1387 397 532 U-box Gene Family AT3G54790 29.412 3.09e-06 48.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal9g1387 - - gmx:100781453 854.358
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal9g1387 9 15587376 15589046 Lal6g0915 6 6347207 6350602 PCT
Lal6g0915 6 6347207 6350602 Lal9g1387 9 15587376 15589046 PCT