Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal9g1385 ATGAACATGATGAGAAGGTTAACCAGCATTGCTTCTGGAAGAACTTCTATTTCATCAGATCCTGAAGGGGATTCTATTACTAAAGATAAGAAGTTTGATCAAGAAAATGAAGGAAAGGTCAATGAGGAAACAAATCCTGTTGAGAGGGGTGACAAAGATCAGGAGCAGCACGTAGATGCATCGCGAGAAAATACTGTTGGAACTTATAATTCCGTTGTTTCTTCGGTAGAGACGACTGAGAATTCAGGTTATGATCAGCTTCCAAAAGAATCAAACGAAATGAAAATTAGAGATGAGAAGCGCAAAACCAACAACGATAAGGATATGGAGACAAGTGTTGTGAATGGTAATGAAACCGAAACGGGTCAAATAATTACAACTACTATTGGTGGTCGAGATGGACAACCAAAGAAGACAGTCTCATATTTGGCAGAACGTGTGGTTGGTACTGGTTCTTTTGGTATTGTTTATCAGGCTAAGTGCCTTGAAACTGGTGAAGAAATCGCAATAAAGAAGGTGTTGCAAAATAAGAGATATAAGAATAGAGAACTACAGGTTATGCTTATGCTTGACCATATTAATGTTCTTAAACTAAAGCACTGTTTCTATTCAACGGTCGATGAAGATGAGTTGTACCTTAACCTAGTTTTGGAGTATGTGCCTGAAACAGTCTACAGAGTTTCTAAGCACTATATTAGGATGCACCAAAACATGCCTATCCTTTTAGTGCAACTGTATATATACCAGATATGTCGTGGCTTAAATTATATGCACCATGTCATCGGTGTCTGTCATCGTGATATCAAACCTCAAAATCTATTGGTTAATCCCCAGAGTCATCACTTGAAAATATGTGATTTTGGGAGTGCAAAGAAGCTGGTGCCCGGTGAACCCAACATATCATACATATGTTCACGGTATTATAGAGCTCCAGAACTTATATTTGGGGCAATCGAATACACAACTGCAATTGATATTTGGTCTGTTGGGTGTGTTTTGGCTGAGCTACTTTTAGGCCAGCCGGTGTTTCCTGGAGAAAGTGGTGTTGATCAGTTGGTGGAGATAATTAAGATCCTTGGAACACCAACCAGAGAAGAAATAAGGTGTATGAACCCAAATAATTACAATGAATTTAAGTTTCCTCAGATAAAAGCGCACCCATGGCACAAGGTTTTTCACAAAAGGATGCCTCCCGAAGTAGTGGATCTTGTGTCTCGGATGCTTCAGTATTCGCCGAATCTACGTTGCACTGCTTTGGAAGCATGTGCACACCCCTTCTTTGACAATCTTCGAGACCCGAAAGTATCCTTGCCTAATGGGCGGGCAATGCCTCCTTTGTTCGATTTCACACCTCAAGAACTGGCAGGCGCGCCCGATGAGTTGCGTACACGTCTCATTCCGGAGCATGCAAGGAGTTGA 1419 0.4109 MNMMRRLTSIASGRTSISSDPEGDSITKDKKFDQENEGKVNEETNPVERGDKDQEQHVDASRENTVGTYNSVVSSVETTENSGYDQLPKESNEMKIRDEKRKTNNDKDMETSVVNGNETETGQIITTTIGGRDGQPKKTVSYLAERVVGTGSFGIVYQAKCLETGEEIAIKKVLQNKRYKNRELQVMLMLDHINVLKLKHCFYSTVDEDELYLNLVLEYVPETVYRVSKHYIRMHQNMPILLVQLYIYQICRGLNYMHHVIGVCHRDIKPQNLLVNPQSHHLKICDFGSAKKLVPGEPNISYICSRYYRAPELIFGAIEYTTAIDIWSVGCVLAELLLGQPVFPGESGVDQLVEIIKILGTPTREEIRCMNPNNYNEFKFPQIKAHPWHKVFHKRMPPEVVDLVSRMLQYSPNLRCTALEACAHPFFDNLRDPKVSLPNGRAMPPLFDFTPQELAGAPDELRTRLIPEHARS 472
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal9g1385 472 SMART serkin_6 142 427 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lal9g1385 472 CDD STKc_GSK3 137 430 IPR039192 -
Lal9g1385 472 MobiDBLite consensus disorder prediction 1 22 - -
Lal9g1385 472 ProSiteProfiles Protein kinase domain profile. 142 427 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lal9g1385 472 ProSitePatterns Protein kinases ATP-binding region signature. 148 172 IPR017441 GO:0005524
Lal9g1385 472 MobiDBLite consensus disorder prediction 61 88 - -
Lal9g1385 472 Gene3D Transferase(Phosphotransferase) domain 1 222 471 - -
Lal9g1385 472 Pfam Protein kinase domain 144 427 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lal9g1385 472 MobiDBLite consensus disorder prediction 23 60 - -
Lal9g1385 472 MobiDBLite consensus disorder prediction 1 113 - -
Lal9g1385 472 SUPERFAMILY Protein kinase-like (PK-like) 141 452 IPR011009 -
Lal9g1385 472 PANTHER GLYCOGEN SYNTHASE KINASE-3 ALPHA 6 472 - -
Lal9g1385 472 ProSitePatterns Serine/Threonine protein kinases active-site signature. 263 275 IPR008271 GO:0004672|GO:0006468
Lal9g1385 472 PANTHER SHAGGY-LIKE KINASE 6 472 - -
Lal9g1385 472 MobiDBLite consensus disorder prediction 90 108 - -
Lal9g1385 472 Gene3D Phosphorylase Kinase; domain 1 127 221 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal9g1385 Lal-Chr9 15551422 15557866 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal9g1385 148 430 Core Cell Cycle Gene Families AT1G76540 35.495 5.07e-53 179
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_GSK Lal9g1385 Pkinase 4.2e-63 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal9g1385 K00924 - gmx:100786458 786.949
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal9g1385 9 15551422 15557866 Lal1g2041 1 22556447 22562883 LSH
Lal9g1385 9 15551422 15557866 Lal6g0922 6 6417684 6423256 PCT
Lal6g0922 6 6417684 6423256 Lal9g1385 9 15551422 15557866 PCT