Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Lal9g1348 | ATGGAGAAGCATAAGTGCAAACTTTGCTTTAGAAGCTTCTCCAATGGTAGAGCTTTAGGGGGTCACATGAGGTCTCATATGATGAACTATCCTCTTCCTTCAAAGCCACAACCTTCATCATCACGAACCATTCAACTCAGTTTCGAAGCCGAATCACCTTCTTCTTCATCATCTTCTGAAGAAAACAGTGATAATAATAATAACAATAATGATGACAAGGGTGTTCTTTGTTATGGTCTTAGAGAGAATCCAAAGAGAAGTTTTCGGCTTGAAGATCCAGATTTTTCATCTATGATCCTTCAAGATAGAGAGAGTAGTGAAACCGGATCATGTAAGAACCGAACATGGCACGAGACTAGTAACTATAGATCTAGAATTACAAGAAAAATGAACGTGTTAGATGATTGTAACAATGATGAAGGTGAAGCAATGATGAAGAAGATTAAGTTAATAAGAAAAGGTAGTAAGATAGAATCATGGGTGGTTGATCATGAAGCTTTGAGTTCGGTTTCTGATGTATCAACCGAGGAAGATGTTGCATTTTGTCTCATGATGATGTCTAGGGATAACAGATGGAAGAGACAGAAGGATCAAGAACAAGAACAATTGATGAAGAAGAATGATAGATATTATGATTATTATGACAAAGAAGAAGATGAAGATGATGATGAAGATGATGATGAAGATGAAATAATGGAAACATTCTCAGATGATGAAGAAAACGATGCATCATCTGAAGAGGAACAACCTAGGTTTTCCAAGAACAAAGTACGAGGAGGAAGGTATAAATGTGAAACATGTAACAAAGTTTTTAGATCTTATCAAGCATTAGGTGGTCATAGAGCGAGTCATAAAAGGATCAAAGTGATGAAGATAAGTAGAGTGAATGATGAAGAAGAATTGTTGAAGAATGAGAATGGTGAGAGTTTTGCTTCAATGGTGGTTGAAAAGAAAATTCATGAATGCCCTATTTGTTTAAGAGTTTTTGCTTCAGGTCAAGCACTTGGTGGACACAAAAGAACACATGTTATTGGGTTAAATGCAACAACAATAAAATCAACACAAGTTTCAACTTCAACAAAGCATGGAAACAAGTTTATAGATCTTAATCTTCCTGCTCCAGGTGATAATGGTGATGATGATGATATTAACTATATTGAGAATTCTGCAGTTTCAGATGCAGATTTTGTGAAACCCCATGAGGCAAAAAAGGGAAATTTTCTAAGTTGA | 1230 | 0.3569 | MEKHKCKLCFRSFSNGRALGGHMRSHMMNYPLPSKPQPSSSRTIQLSFEAESPSSSSSSEENSDNNNNNNDDKGVLCYGLRENPKRSFRLEDPDFSSMILQDRESSETGSCKNRTWHETSNYRSRITRKMNVLDDCNNDEGEAMMKKIKLIRKGSKIESWVVDHEALSSVSDVSTEEDVAFCLMMMSRDNRWKRQKDQEQEQLMKKNDRYYDYYDKEEDEDDDEDDDEDEIMETFSDDEENDASSEEEQPRFSKNKVRGGRYKCETCNKVFRSYQALGGHRASHKRIKVMKISRVNDEEELLKNENGESFASMVVEKKIHECPICLRVFASGQALGGHKRTHVIGLNATTIKSTQVSTSTKHGNKFIDLNLPAPGDNGDDDDINYIENSAVSDADFVKPHEAKKGNFLS | 409 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Lal9g1348 | 409 | Gene3D | Classic Zinc Finger | 260 | 342 | - | - | |
| Lal9g1348 | 409 | PANTHER | CYS2/HIS2 ZINC-FINGER TRANSCRIPTION FACTOR | 1 | 398 | - | - | |
| Lal9g1348 | 409 | MobiDBLite | consensus disorder prediction | 214 | 245 | - | - | |
| Lal9g1348 | 409 | ProSiteProfiles | Zinc finger C2H2 type domain profile. | 262 | 289 | IPR013087 | - | |
| Lal9g1348 | 409 | MobiDBLite | consensus disorder prediction | 32 | 73 | - | - | |
| Lal9g1348 | 409 | SUPERFAMILY | beta-beta-alpha zinc fingers | 3 | 31 | IPR036236 | - | |
| Lal9g1348 | 409 | SMART | c2h2final6 | 320 | 342 | IPR013087 | - | |
| Lal9g1348 | 409 | SMART | c2h2final6 | 262 | 284 | IPR013087 | - | |
| Lal9g1348 | 409 | SMART | c2h2final6 | 4 | 26 | IPR013087 | - | |
| Lal9g1348 | 409 | SUPERFAMILY | beta-beta-alpha zinc fingers | 261 | 342 | IPR036236 | - | |
| Lal9g1348 | 409 | ProSitePatterns | Zinc finger C2H2 type domain signature. | 264 | 284 | IPR013087 | - | |
| Lal9g1348 | 409 | ProSitePatterns | Zinc finger C2H2 type domain signature. | 6 | 26 | IPR013087 | - | |
| Lal9g1348 | 409 | Pfam | C2H2-type zinc finger | 320 | 342 | - | - | |
| Lal9g1348 | 409 | Pfam | C2H2-type zinc finger | 4 | 27 | - | - | |
| Lal9g1348 | 409 | Pfam | C2H2-type zinc finger | 261 | 286 | - | - | |
| Lal9g1348 | 409 | MobiDBLite | consensus disorder prediction | 192 | 255 | - | - | |
| Lal9g1348 | 409 | ProSiteProfiles | Zinc finger C2H2 type domain profile. | 320 | 342 | IPR013087 | - | |
| Lal9g1348 | 409 | PANTHER | ZINC FINGER PROTEIN ZAT1-RELATED | 1 | 398 | IPR044303 | GO:0006355 | |
| Lal9g1348 | 409 | MobiDBLite | consensus disorder prediction | 192 | 213 | - | - | |
| Lal9g1348 | 409 | ProSitePatterns | Zinc finger C2H2 type domain signature. | 322 | 342 | IPR013087 | - | |
| Lal9g1348 | 409 | ProSiteProfiles | Zinc finger C2H2 type domain profile. | 4 | 31 | IPR013087 | - | |
| Lal9g1348 | 409 | MobiDBLite | consensus disorder prediction | 24 | 76 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Lal9g1348 | Lal-Chr9 | 14951023 | 14952252 | Dispersed/Transposed |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Lal9g1348 | 1 | 386 | C2H2 Transcription Factor Family | AT3G60580 | 37.468 | 2.69e-59 | 193 |
Transcription factors information
| Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
|---|---|---|---|---|---|---|---|
| TF | C2H2 | Lal9g1348 | zf-C2H2_6 | 5.5e-12 | CL0361 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Lal9g1348 | - | - | lang:109360076 | 549.666 |
Event-related genes
| Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
|---|---|---|---|---|---|---|---|---|---|
| Lal9g1348 | 9 | 14951023 | 14952252 | Lal9g1348 | 9 | 14951023 | 14952252 | ECH | |
| Lal9g1348 | 9 | 14951023 | 14952252 | Lal14g0825 | 14 | 10417298 | 10418933 | ECH | |
| Lal9g1348 | 9 | 14951023 | 14952252 | Lal14g0825 | 14 | 10417298 | 10418933 | PCT | |
| Lal9g1348 | 9 | 14951023 | 14952252 | Lal19g0276 | 19 | 2786060 | 2787091 | PCT | |
| Lal14g0825 | 14 | 10417298 | 10418933 | Lal9g1348 | 9 | 14951023 | 14952252 | PCT | |
| Lal19g0276 | 19 | 2786060 | 2787091 | Lal9g1348 | 9 | 14951023 | 14952252 | PCT |