Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal9g1339 ATGAATGTGAGGATTGGATTTTATAGGTTTCATGTGGTGTCAGAGTTTGATGATTCAAAGAGGAGTTTCAGAAGGAGATTGGTTGGTCACAATGAGAGAAGAAGAAAGAACTCACAAGATTCTCTTGCAAGGAATAATACTTCAGAAGATAATGAGAGTAAAAATATTATTGATAAGTGA 180 0.3389 MNVRIGFYRFHVVSEFDDSKRSFRRRLVGHNERRRKNSQDSLARNNTSEDNESKNIIDK 59
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal9g1339 59 MobiDBLite consensus disorder prediction 28 59 - -
Lal9g1339 59 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 7 9 50 - -
Lal9g1339 59 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 9 50 IPR044817 GO:0003677
Lal9g1339 59 ProSiteProfiles Zinc finger SBP-type profile. 1 37 IPR004333 GO:0003677
Lal9g1339 59 SUPERFAMILY SBT domain 9 42 IPR036893 GO:0003677|GO:0005634
Lal9g1339 59 Pfam SBP domain 9 36 IPR004333 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal9g1339 Lal-Chr9 14801121 14801611 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal9g1339 9 57 SBP-box Gene Family AT2G47070 51.020 3.35e-12 57.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Lal9g1339 SBP 4.1e-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal9g1339 - - gsj:114372937 70.8626