Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal9g1101 ATGGCAGATCCTGCTACTTATGGGAATCATGAGCGTAATACTGAGCAAGTATTCTTTACTTTAAAAAAGGGCACTCAATTAGTTAAGTATAGTCGGAAAGGGAAGCCAAAATTTTGTCCATTCAGGCTCTCACCGGATGAAGCATCACTTATTTGGATTTCTCGCGGAAAGGAAAAGAAACTGAGTTTATCTTCTGTTACACGAATCATCGCTGGACAGAGAACAGCTGTCTTTAGAAGATATTTGCGCCCTGAAAAGGATTATCTGTCATTTTCACTTATTTACAAAAAAGGGGAACGATCACTTGATCTGATCTGCAAGGACAAAGTTGAGGTTGAGGTATGGTTTGAAGGCCTCAAGGCACTAATTTCTACTGGTCCGCGTATTAGGCGCACTAAAAGTGACTTTACTGATGATAGCATTGACTTGATTCAGAATGATCGTCCTTCCATTGGAACACTAGAGTTTACTTCAAGCATTGCCCATGGTAGGTTTTCAGTTGACTCAGATGTTGGGCCAGAACGTGCAAATATGCCAATAAGGACAAGTATTGGAGATGGTTCCCGTGTTAGCGTGTCAAGTATTGGCTATGCAAGTAGTGTAGCATCAGGACCAGATGACATAGAGTCTCTAGGTGATGTTTATATATGGGGTGAGGTTTGGACAAATGGGATTTCATCTGATGGGTTGGGGAGTCAAACCCCTTCTAAGATAGACGTTCTTTCTCCTAAGGCATTGGAATCTAATGTTGTTATTGATGTTTATCAGATAGGTTCTGGTGTACATCACATTGCTCTAGTTACAAGGCAAGGAGAGGTTTTTACTTGGGGAGAGGAGTCTGGTGGAAGACTTGGTCATGGGTCTGATAAAGATTTTGGTCAACCCCATCTTGTGGAGTCCCTAGCAATGACTAGTATGAGTTTTGTTTCATGTGGTGAATTTCATACATGTGCTGTATCTACATCTGGTGATCTTTACACCTGGGGTGATGGTACACATAATGTTGGACTTCTCGGCCATGGCACTAATGTTAGTCACTGGATACCAAAGAGGGTTAGTGGCCTTTTAGAAGGACTTCAGGTTGTATCTCTATCTTGTGGCTCATGGCATTCAGCATTGACAACCTCCAATGGCAAATTGTTTACCTTTGGTGATGGAAGGTTTGGTGTCTTGGGCCATGGTGATCGAGAGAGTGTATCATATCCAAAGGAAGTACAATTATCGAGTGGACAAAAGGCTATTAAGGTTGCGTGTGGAGTATGGCATACAGCAGCCATTATAGAGGTAACGGATCCGTCTGGTTCAAATGCTTTATCCAGAAAGCAACTATTCACATGGGGTGATGGTGACCAATATCGTTTGGGACATGTTAGCAAGGAAACTTACCTTCAACCAACTTGTGTATCTACGCTTTCTGAATATGATTTTCAGCAGGTAGCATGTGGGAACACTATGACTGTCGCGCTCACTGTATCTGGTCATGTATTTATTATGGGAATTAATGCATATGGCCAACTTGGAAATCCTCTCTCTGATGGAAAAGTGCCAATTCTTGTCCGAGATAAGTTGGTAGGCGAGTGTGTGGAGGAAATATCATGTGGAGCACATCATGTTGCTGTGTTGACTTCAAGAAGTGAACTATATACTTGGGGAGGAGGTGCCAATGGAAGATTGGGACATGGAGACACTGATGACCAGAAATCTCCAAAATTGGTGGAAGCCTTCAAAGACAGGCATGTAAAGAATATTTCATGTGGCTCTAACTTTACAACTTGTATATGCATACATAAATGGGTCTCTGGAGCTGATCAATCTCTTTGCACTGGTTGTCGACAACCTTTTGGTTTTACTAAAAAAAGGCATAATTGTTATAATTGTGGATTGGTGCATTGCCATGGGTGTAGTTCCAAAAAGGCAATGAAGGCAGCATTGGCTCCAACACCAGGAAAACCACATCGTGTGTGTGATAATTGCTATGCAAAGCTTAAAGGTTCTATCTCTGATTCTGGTGCCTTTTTTAATAAAGAAGCTACTCGTCCACGTAGTTCCGTATATGGGAGTGAAAGGCTTCCCCGGGGAGAAGTAAGGTCTTCAAGAACACTCTTGTCTCCTATCACAGAACCAGTAAAATACCTTGAGATAAGAACTAGTAAGTCTGGAAGTAAACATGACTCTTCTTCTATAGTCAGAGCTTCTCAAGTCCCTTCACATTTACAATTGAAAGATGTTGCGTTTCCAAGTTCATTGAGTGCGATGCAAAATAATTTCAAGCCTGTTATACTTCCAAGTCAACCTCCAGTCCAGCCTCCGATCCAACCTCCAACTCCACCTGCACCAGTTATTTCGAGACCTACATCACCATATGCAAGAAAACCAAGCCCACCACGTTCTACCTCCCCCGGATTTTCAAGAAGCCTTATTGATAGTTTAAAGAAGAAAAATGAGCTTTTGAATCTAGAAGTCTCAAAATTGCAAAAACAAATTCGAAATTTGAAGCAGAGGAGTGACATGCAAGAAATGAAGATTGAAGGGCTACAGAAAGATGTTCAAGGAACCGCCTCATTGGCTGGAGAGGAATCTTCTAAGCATAGAGTAACAAAGGAATTTCTTAAGTGCATCACAGATCAGTTGAGTGAAGTGACTGAGAAGTTGCCACCTGATATTTCTGGAACTGAAACTTTGAGAATCATGCAAGCTCAAGCTAAAGATTTTCTTCAAGAAAGAGTAGATTTTCAATCTTCTTCTGCACCTGATATACCTGCTTCGGAAAGTGACGCTCCTAAACCACAAGAACAAAGGTTGGAACAAAATTACCCATCAATAGATGAAGGAAATGTTCTTCAAGAAAACAAAAGATTATTTGAATCTAGTGCAGAAATGGCTCTACCAACCTCAAGTACTTCAGCATCACTTGACTTGTATAAGTCCACGAAAGAAGGAGAAACATCAGTGATTGAGCAATTTGAACGCGGTGTTTATATCACAGCCGTTGTACTACCTAGTGGTGGCAAAGTTTTCAAACGAGTTAGATTCAGTAAGCGAAAATTCGATGAGCAACGGGCAGAAGAATGGTGGAACCAGAACAAAGACAGGGTGTTTAAAAAGTATAGTCCAGCAGGTACAAAGGATGCAGCAGGTACTGGTTCATTTATCACCCGGTCGCATTCTGAAGAGAATGTTGATGCATCATCGTCTTCTAAGACTTAG 3207 0.4147 MADPATYGNHERNTEQVFFTLKKGTQLVKYSRKGKPKFCPFRLSPDEASLIWISRGKEKKLSLSSVTRIIAGQRTAVFRRYLRPEKDYLSFSLIYKKGERSLDLICKDKVEVEVWFEGLKALISTGPRIRRTKSDFTDDSIDLIQNDRPSIGTLEFTSSIAHGRFSVDSDVGPERANMPIRTSIGDGSRVSVSSIGYASSVASGPDDIESLGDVYIWGEVWTNGISSDGLGSQTPSKIDVLSPKALESNVVIDVYQIGSGVHHIALVTRQGEVFTWGEESGGRLGHGSDKDFGQPHLVESLAMTSMSFVSCGEFHTCAVSTSGDLYTWGDGTHNVGLLGHGTNVSHWIPKRVSGLLEGLQVVSLSCGSWHSALTTSNGKLFTFGDGRFGVLGHGDRESVSYPKEVQLSSGQKAIKVACGVWHTAAIIEVTDPSGSNALSRKQLFTWGDGDQYRLGHVSKETYLQPTCVSTLSEYDFQQVACGNTMTVALTVSGHVFIMGINAYGQLGNPLSDGKVPILVRDKLVGECVEEISCGAHHVAVLTSRSELYTWGGGANGRLGHGDTDDQKSPKLVEAFKDRHVKNISCGSNFTTCICIHKWVSGADQSLCTGCRQPFGFTKKRHNCYNCGLVHCHGCSSKKAMKAALAPTPGKPHRVCDNCYAKLKGSISDSGAFFNKEATRPRSSVYGSERLPRGEVRSSRTLLSPITEPVKYLEIRTSKSGSKHDSSSIVRASQVPSHLQLKDVAFPSSLSAMQNNFKPVILPSQPPVQPPIQPPTPPAPVISRPTSPYARKPSPPRSTSPGFSRSLIDSLKKKNELLNLEVSKLQKQIRNLKQRSDMQEMKIEGLQKDVQGTASLAGEESSKHRVTKEFLKCITDQLSEVTEKLPPDISGTETLRIMQAQAKDFLQERVDFQSSSAPDIPASESDAPKPQEQRLEQNYPSIDEGNVLQENKRLFESSAEMALPTSSTSASLDLYKSTKEGETSVIEQFERGVYITAVVLPSGGKVFKRVRFSKRKFDEQRAEEWWNQNKDRVFKKYSPAGTKDAAGTGSFITRSHSEENVDASSSSKT 1068
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal9g1101 1068 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 257 267 IPR000408 -
Lal9g1101 1068 MobiDBLite consensus disorder prediction 762 794 - -
Lal9g1101 1068 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 610 669 IPR013083 -
Lal9g1101 1068 SUPERFAMILY PH domain-like 14 123 - -
Lal9g1101 1068 Pfam Regulator of chromosome condensation (RCC1) repeat 377 426 IPR000408 -
Lal9g1101 1068 Pfam Regulator of chromosome condensation (RCC1) repeat 492 541 IPR000408 -
Lal9g1101 1068 Pfam Regulator of chromosome condensation (RCC1) repeat 271 319 IPR000408 -
Lal9g1101 1068 Pfam Regulator of chromosome condensation (RCC1) repeat 442 489 IPR000408 -
Lal9g1101 1068 Pfam Regulator of chromosome condensation (RCC1) repeat 546 593 IPR000408 -
Lal9g1101 1068 Pfam Regulator of chromosome condensation (RCC1) repeat 322 372 IPR000408 -
Lal9g1101 1068 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 416 426 IPR000408 -
Lal9g1101 1068 Pfam Transcription factor regulating root and shoot growth via Pin3 982 1036 IPR013591 -
Lal9g1101 1068 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 545 596 IPR000408 -
Lal9g1101 1068 MobiDBLite consensus disorder prediction 1036 1068 - -
Lal9g1101 1068 CDD FYVE_like_SF 607 659 - -
Lal9g1101 1068 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 441 492 IPR000408 -
Lal9g1101 1068 ProSiteProfiles Zinc finger FYVE/FYVE-related type profile. 601 663 IPR017455 -
Lal9g1101 1068 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 378 429 IPR000408 -
Lal9g1101 1068 PANTHER CHROMOSOME CONDENSATION REGULATOR RCC1 REPEAT PROTEIN 13 1045 - -
Lal9g1101 1068 SMART fyve_4 595 664 IPR000306 GO:0046872
Lal9g1101 1068 CDD PH_PLC_plant-like 12 124 - -
Lal9g1101 1068 Gene3D - 186 436 IPR009091 -
Lal9g1101 1068 Pfam Pleckstrin homology domain 15 123 IPR001849 -
Lal9g1101 1068 MobiDBLite consensus disorder prediction 761 804 - -
Lal9g1101 1068 MobiDBLite consensus disorder prediction 910 932 - -
Lal9g1101 1068 Gene3D - 437 609 IPR009091 -
Lal9g1101 1068 PANTHER REGULATOR OF CHROMOSOME CONDENSATION 13 1045 - -
Lal9g1101 1068 Coils Coil 807 848 - -
Lal9g1101 1068 Pfam Transcription factor BRX N-terminal domain 858 892 IPR027988 -
Lal9g1101 1068 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 212 270 IPR000408 -
Lal9g1101 1068 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 323 377 IPR000408 -
Lal9g1101 1068 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 493 544 IPR000408 -
Lal9g1101 1068 PRINTS Chromosome condensation regulator RCC1 signature 273 289 IPR000408 -
Lal9g1101 1068 PRINTS Chromosome condensation regulator RCC1 signature 323 339 IPR000408 -
Lal9g1101 1068 PRINTS Chromosome condensation regulator RCC1 signature 364 380 IPR000408 -
Lal9g1101 1068 PRINTS Chromosome condensation regulator RCC1 signature 380 394 IPR000408 -
Lal9g1101 1068 PRINTS Chromosome condensation regulator RCC1 signature 482 500 IPR000408 -
Lal9g1101 1068 PRINTS Chromosome condensation regulator RCC1 signature 540 561 IPR000408 -
Lal9g1101 1068 SUPERFAMILY FYVE/PHD zinc finger 597 668 IPR011011 -
Lal9g1101 1068 ProSiteProfiles BRX domain profile. 982 1037 IPR013591 -
Lal9g1101 1068 SUPERFAMILY RCC1/BLIP-II 212 598 IPR009091 -
Lal9g1101 1068 CDD Prefoldin 807 847 - -
Lal9g1101 1068 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 271 322 IPR000408 -
Lal9g1101 1068 MobiDBLite consensus disorder prediction 1047 1068 - -
Lal9g1101 1068 Gene3D - 12 130 IPR011993 -
Lal9g1101 1068 Pfam FYVE zinc finger 597 662 IPR000306 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal9g1101 Lal-Chr9 9102053 9112432 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal9g1101 979 1037 Major Intrinsic Protein MIP AT1G31880 40.678 1.95e-09 58.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal9g1101 - - lang:109339054 1937.54