Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal9g1098 ATGGATTGTTCCTCCATCCATCACTCATCAAACTCCTTTATCTCCTCAGAATCTCCACTTGGGACACCAGATTTATTCTCTTTCAATCTCAACAATGATCACTACCTTCCCTTCAATGAGAATGACCCTGAAGAGATGCTACTCTATGGCATGATCACATCCCAACAACAACCATTTGGAACATGTAGAGTCAAGAAGGAAGATGACGTTATATCAAAGGAAAAAGGTTGTGGTGGTGACAACAACATCATAATGAATAAGGACAAGACTTACCGAGGCGTCCGGCGGCGGCCGTGGGGGAAGTTTGCGGCGGAGATAAGGGACTCCACAAGACATGGAATAAGGGTGTGGCTTGGGACATTTGATAGTGCAGAAGCAGCAGCACTAGCTTATGATCAAGCTGCTTATTCCATGAGGGGTTCTGCAGCAATACTCAACTTCCCTGTGGAGAGGGTGAAGGAATCACTTAGAGAGATCATGAACTACGGTTGTGAAAATGATGGTGGTGGTGGGTGTTCCCCTGTGATGGTTTTGAAGAGAAAACACTCCATGAGAAAGAAAATGGGAATCAAGAAGAAAGAGAGAGATGTTAGGGTAGAAAATGTTCTTGTCTTTGAAGATTTAGGTGTAGAATATTTGGAACAGTTATTGATGTCCTCTGAGAATGCAAGCAGTCGGTGA 681 0.4391 MDCSSIHHSSNSFISSESPLGTPDLFSFNLNNDHYLPFNENDPEEMLLYGMITSQQQPFGTCRVKKEDDVISKEKGCGGDNNIIMNKDKTYRGVRRRPWGKFAAEIRDSTRHGIRVWLGTFDSAEAAALAYDQAAYSMRGSAAILNFPVERVKESLREIMNYGCENDGGGGCSPVMVLKRKHSMRKKMGIKKKERDVRVENVLVFEDLGVEYLEQLLMSSENASSR 226
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal9g1098 226 PANTHER DNA-BINDING DOMAIN 26 219 IPR044808 GO:0003700|GO:0009873
Lal9g1098 226 PRINTS Ethylene responsive element binding protein signature 91 102 IPR001471 GO:0003700|GO:0006355
Lal9g1098 226 PRINTS Ethylene responsive element binding protein signature 114 130 IPR001471 GO:0003700|GO:0006355
Lal9g1098 226 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 1B 26 219 - -
Lal9g1098 226 Pfam AP2 domain 91 140 IPR001471 GO:0003700|GO:0006355
Lal9g1098 226 Gene3D AP2/ERF domain 89 150 IPR036955 GO:0003700|GO:0006355
Lal9g1098 226 SMART rav1_2 90 154 IPR001471 GO:0003700|GO:0006355
Lal9g1098 226 ProSiteProfiles AP2/ERF domain profile. 90 148 IPR001471 GO:0003700|GO:0006355
Lal9g1098 226 SUPERFAMILY DNA-binding domain 90 150 IPR016177 GO:0003677
Lal9g1098 226 CDD AP2 91 149 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal9g1098 Lal-Chr9 9071996 9072676 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal9g1098 36 225 AP2-EREBP Transcription Factor Family AT3G23240 58.883 2.09e-70 213
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Lal9g1098 AP2 2.4e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal9g1098 K14516 - pvy:116118059 245.358
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal2g1155 2 8349234 8349932 Lal9g1098 9 9071996 9072676 LSH