Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal9g1071 ATGGATTCAGATCAAGGGAAGCTTTTCATTGGTGGGATTTCATGGGAAACTAACGAAGACAAGCTCAGGGACTATTTCGGAAACTACGGTGATGTCTCTCACGCTTCTGTTATGAGGGACAAGAACACTGGCAAGCCTCGAGGTTTTGCCTTTGTCGTTTTTTCAGATCCGTCTGTTCTTGATAGGGTTCTTGAAGATACCCATGTTATTGATGGAAGAACGGTCGATGCCAAGAGAGCCTTGTCAAGAGAGGATCAACAGATTTCTGGTAATTTTAGAACTGGTAATTCCAACTCTGGTAGGAATTCTGGAAATGGTGGAAATATCAGGACGAAAAAAATATTTGTTGGAGGGTTACCTCCCACCCTGACTGAAGAAAATTTTCGTGAATACTTTGAGGCTTATGGCCAAGTAACTGATGTAGTAGTCATGTATGACCAGAATACTGGACGACCTCGAGGATTTGGGTTTATTTCTTTTGACAATGAAGATGCAGTTGATAGAGTTTTGCAGAAGACATTTCATGATTTAAATGGTAAAAACGTGGAGGTAAAGCGTGCACTTCCCAAGGATGCTAATCCTGGTGCAAGTAGCCGCATGGGTGGTGCTGGAAGTGGTGGGTATCAGGGGTATGGGTCTTCTGGTGGCAACCAAAATGCATATGATGGCCGGGTGGATTCAAGTAGGTATGTGCAGCCTCAAAACACTGCAAGTGGATTTCCACCATATGGTTCTTCTGGGTATAGTGCTCCGGGGTATGGTTATGGTGCTGCTAATAATGGCGTTGGTTATGGTGCATATGGAGGTTATAGTGGTGCCACTGCTGGATATGGTGGACCTGCTGGTGCATCATATGGGAATCCAAATGCTGCTTATGCTGGTGGTCAACCAGGTGGCCCGAGGAGTTCATGGTCGACTCAGGCTCCCTCTGGTTATGGGTCTGTAGGCTATGGAAACACTGCTCCTTGGGGTGCCCCAAGCGGTGGTGCTGGATCTGGTAGTGGTGGCCCTGGTTCAGCACCTGCAGGTCAATCTCCGGGTGCAGTTGCTGGATATGGGAATCAAGGTTATGGATATGGTGGGTATGGTGGAAGTGATAGCTCTTATGGGAATCCAGGTGCTTATGGTGCTGTTGGAGGCCGTTCTGGGAGTGCCCCAAATAGTGAGCTACAAGGAAGTGTTGGCAACTATATGGGAAGTGGCTATAGTGATCCAAATGGAAATTCAGGGTATGGAAATACAGCATGGAGGTCTGAACCAACACAAGCATCAGGAAATTATGGGACTCCTCAGGGAAATGATGCTGCCCATGCTGGGCAAGGTGGTTATGGTGGTGGATATGGCAGTGCTCAGTCTCATCAAGCCCAACAGCAGTAG 1377 0.4735 MDSDQGKLFIGGISWETNEDKLRDYFGNYGDVSHASVMRDKNTGKPRGFAFVVFSDPSVLDRVLEDTHVIDGRTVDAKRALSREDQQISGNFRTGNSNSGRNSGNGGNIRTKKIFVGGLPPTLTEENFREYFEAYGQVTDVVVMYDQNTGRPRGFGFISFDNEDAVDRVLQKTFHDLNGKNVEVKRALPKDANPGASSRMGGAGSGGYQGYGSSGGNQNAYDGRVDSSRYVQPQNTASGFPPYGSSGYSAPGYGYGAANNGVGYGAYGGYSGATAGYGGPAGASYGNPNAAYAGGQPGGPRSSWSTQAPSGYGSVGYGNTAPWGAPSGGAGSGSGGPGSAPAGQSPGAVAGYGNQGYGYGGYGGSDSSYGNPGAYGAVGGRSGSAPNSELQGSVGNYMGSGYSDPNGNSGYGNTAWRSEPTQASGNYGTPQGNDAAHAGQGGYGGGYGSAQSHQAQQQ 458
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal9g1071 458 MobiDBLite consensus disorder prediction 81 110 - -
Lal9g1071 458 Gene3D - 4 88 IPR012677 -
Lal9g1071 458 MobiDBLite consensus disorder prediction 210 224 - -
Lal9g1071 458 MobiDBLite consensus disorder prediction 326 350 - -
Lal9g1071 458 MobiDBLite consensus disorder prediction 384 433 - -
Lal9g1071 458 Gene3D - 107 228 IPR012677 -
Lal9g1071 458 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 112 189 IPR000504 GO:0003723
Lal9g1071 458 MobiDBLite consensus disorder prediction 370 458 - -
Lal9g1071 458 SMART rrm1_1 7 78 IPR000504 GO:0003723
Lal9g1071 458 SMART rrm1_1 113 185 IPR000504 GO:0003723
Lal9g1071 458 SUPERFAMILY RNA-binding domain, RBD 111 218 IPR035979 GO:0003676
Lal9g1071 458 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 114 180 IPR000504 GO:0003723
Lal9g1071 458 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 8 75 IPR000504 GO:0003723
Lal9g1071 458 SUPERFAMILY RNA-binding domain, RBD 3 110 IPR035979 GO:0003676
Lal9g1071 458 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 6 82 IPR000504 GO:0003723
Lal9g1071 458 MobiDBLite consensus disorder prediction 188 224 - -
Lal9g1071 458 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 1 1 456 - -
Lal9g1071 458 MobiDBLite consensus disorder prediction 84 109 - -
Lal9g1071 458 CDD RRM1_hnRNPA_hnRNPD_like 8 78 - -
Lal9g1071 458 CDD RRM2_DAZAP1 110 189 IPR034131 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal9g1071 Lal-Chr9 8695115 8698910 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal9g1071 8 200 Eukaryotic Initiation Factors Gene Family AT2G23350 23.558 3.47e-08 53.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal9g1071 K14411 - gmx:100811267 519.62