Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal9g1042 ATGTTTCAACTTTCTGTGTTCTTAACCACTTCAAAAGGTGACAAAGCTAGAAGCTATGAAGAACGGAAACCTCTCCATCTTGAGCCACTTTTATGCTTCAATGTTTCTCTCTTTTCAGGGATGGAGGCCATTGGTTCTGTGGATGAACTCTTGGATTTCTCATTAGACATAGGTGAGGAAGATGATGACGAGAACAAAAACAAGAAAGCCTTTCCTAAACTTGACCCAAAATGCAGTGATCCACCGTCCTTAAGCCCATTGGACCTGGATGATCCTAGCCCTCCATTTTCTGAGTTTGCAGAAGAAGAGCTTGAATGGCTATCCAACAAAGATGCATTTCCTGAGGTTGAAACATTTGTTGACTTACCCTCTATTCAACCCAACTTATCTAAGCATGAGACATGTTCAATGCTTGAATACAGCACAAGCAGTAGCAACAGTAATAACAGCCCTAACAGTATTAGCCTCTTAAGCGGTTATGATAACCTGAACGTCCCTGTCCGTCCACGGAGTAAGTCTCGCAGTCGCAGCAGGCATCTCGCTAGCAATTCTGGCATATCCTCCCAGCAATCCTGGTGGAGACAGCCAATTAATGAAAATGCCAGACCAGAAGTGATAACAATGTCAACCATTGGGAGGAAATGTCAGCACTGTGGAGCCGAAAAAACTCCGCAATGGCGTGCAGGCCCCCTTGGGCCAAAAACACTTTGTAATGCATGTGGGGTTAGATACAAGTCCGGGCGTCTTGTGCCTGAGTACCGCCCTGCAAGTAGCCCATCTTTTCGCAGTGATTTGCATTCAAATTCTCATAGGAAGGTAATGGAGATGAGGAAGCAGAAGCAAATTGGAATGACTTGA 858 0.4487 MFQLSVFLTTSKGDKARSYEERKPLHLEPLLCFNVSLFSGMEAIGSVDELLDFSLDIGEEDDDENKNKKAFPKLDPKCSDPPSLSPLDLDDPSPPFSEFAEEELEWLSNKDAFPEVETFVDLPSIQPNLSKHETCSMLEYSTSSSNSNNSPNSISLLSGYDNLNVPVRPRSKSRSRSRHLASNSGISSQQSWWRQPINENARPEVITMSTIGRKCQHCGAEKTPQWRAGPLGPKTLCNACGVRYKSGRLVPEYRPASSPSFRSDLHSNSHRKVMEMRKQKQIGMT 285
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal9g1042 285 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 211 273 - -
Lal9g1042 285 SMART GATA_3 209 259 IPR000679 GO:0006355|GO:0043565
Lal9g1042 285 MobiDBLite consensus disorder prediction 61 75 - -
Lal9g1042 285 MobiDBLite consensus disorder prediction 140 159 - -
Lal9g1042 285 MobiDBLite consensus disorder prediction 165 192 - -
Lal9g1042 285 MobiDBLite consensus disorder prediction 59 92 - -
Lal9g1042 285 Pfam GATA zinc finger 215 248 IPR000679 GO:0006355|GO:0043565
Lal9g1042 285 ProSitePatterns GATA-type zinc finger domain. 215 240 IPR000679 GO:0006355|GO:0043565
Lal9g1042 285 PANTHER GATA TRANSCRIPTION FACTOR 1 47 281 - -
Lal9g1042 285 CDD ZnF_GATA 214 262 IPR000679 GO:0006355|GO:0043565
Lal9g1042 285 ProSiteProfiles GATA-type zinc finger domain profile. 209 245 IPR000679 GO:0006355|GO:0043565
Lal9g1042 285 PANTHER GATA TRANSCRIPTION FACTOR 47 281 - -
Lal9g1042 285 MobiDBLite consensus disorder prediction 178 192 - -
Lal9g1042 285 Gene3D - 210 281 IPR013088 GO:0006355|GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal9g1042 Lal-Chr9 8321701 8326188 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal9g1042 101 283 C2C2-Gata Transcription Factor Family AT3G24050 47.619 8.07e-46 154
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Lal9g1042 GATA 1.1e-16 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal9g1042 - - gmx:100784527 286.574