Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal9g1009 ATGGGGAACACTTGTGTTGGTCCAAGCATTTCAAGGAATGGTTTTCTTCAATCAGTTTCTGCGGCAATTTGGTGGTCCCAATCACCGGAAGGAACGGTATCGAAATCGAATTCTAATAGCGGAACTGGAAATGTGGAAACATGTAAAGAGCCCGAGTCACCCTTGCCTGTCCAAAGCAAACCCCCTGAGCAGATAACTATGCCAAAATCTGAAGCAAAACCAGTAGCAAAACCAGAAACAGAAACAGAACGAGAAAAGGAGAAGAAGAAAACCAAGAAACCTGGTCATGTGAAGAGAGTTTCTAGTGCAGGACTTCGCGTTGATTCTGTGTTACAAACCGAGACTGGTAATTTCAAGGAGTTCTTCACTCTGGGGAGGAAACTCGGACAGGGTCAGTTTGGGACAACATTCTTGTGTATTGAGAAGGCAACAGGGCGCGAGTATGCCTGCAAATCAATTGCGAAGAGGAAGCTGGTTAATGATGAAGATGTCGAAGATGTGAGAAGAGAAATTCAGATAATGCACCATTTGGCAGGGCATCCTAATGTTATATCCATCAAAGGTGCTTATGAGGATTCAGTGGCAGTGCATGTTATTATGGAGTTATGTGTCGGTGGTGAGCTTTTCGATAGGATAATTCAGCGTGGACATTATACCGAAAGACAGGCCGCTAATCTCATTAGGACTATAGTTGACGTTGTCGAGGCTTGTCACTCTCTAGGTGTTATGCACAGAGACCTTAAACCTGAGAACTTTCTCTTTGTGGATAAACAGGAGGATTCACCTATCAAAACCATTGACTTCGGATTATCCATGTTCTTTAAGCCAGGTGAAATATTTATGAACGTAGTTGGAAGTCCATATTATGTCGCCCCCGAAGTTTTGGGAAAGTGGTATGGTCCTGAAGCCGATGTTTGGAGTGCTGGGGTTATCCTTTACATTCTTCTGAGTGGAGTACCTCCATTTTGGGCTGAAAACGAACAAGGAATATTTGAGCAGGTTCTGCGCGGCGATCTTGACTTTGCTTCGGATCCCTGGCCTCAAATCTCTGAAAGTGCCAAAGATTTAGTAAAGAAAATGCTTGTTCGTGACCCTAGAAGGAGGCTGACTGCACATCAAGTATTATGTCATCCATGGATTCAAGTTGATGGTGTGGCTCCAGACAAGCCACTTGATTCCGCTGTATTAAGTCGCTTGAAGCAGTTTTCGGCGATGAACAAGCTGAAGAAAATGGCTCTCATAGTCATCGCAGAGAGCTTATCTGAAGAAGAAATAGCTGGCTTGAAAGAAATGTTCAAGATGATAGATACAGACAACTCTGGTCAAATCACTTTCGATGAACTTAAAGCTGGTTTGAAAAGAGTGGGTGCTAATCTTAAGGAGTCTGAAATTTACGATTTAATGCATGCGGCTGATATAGATAACAGTGGAACAATTGATTACTGTGAATTCATTGCTGCAACATTGCATCTAAACAAGATCGAAAGAGAAGATCATCTATTTGCAGCCTTTTCTTACTTTGATAAAGATGGAAGCGGCTATATTACTCAAGATGAACTTCAACAGGCTTGTGATGAGTTTGGCATCGGAGATATCCACTTGGAGGAGATAATCAGAGAAATCGACGAAGACAATGATGGCAGAATAGATTATAATGAGTTTGTGGCCATGATGCAGAAAGGAAATGCTCCTATAGTTGGTAGAAAGGGCCTAGAACATAGCTTCAGCATTGGGTTCAGGGAGGCACTCAAATAG 1755 0.4268 MGNTCVGPSISRNGFLQSVSAAIWWSQSPEGTVSKSNSNSGTGNVETCKEPESPLPVQSKPPEQITMPKSEAKPVAKPETETEREKEKKKTKKPGHVKRVSSAGLRVDSVLQTETGNFKEFFTLGRKLGQGQFGTTFLCIEKATGREYACKSIAKRKLVNDEDVEDVRREIQIMHHLAGHPNVISIKGAYEDSVAVHVIMELCVGGELFDRIIQRGHYTERQAANLIRTIVDVVEACHSLGVMHRDLKPENFLFVDKQEDSPIKTIDFGLSMFFKPGEIFMNVVGSPYYVAPEVLGKWYGPEADVWSAGVILYILLSGVPPFWAENEQGIFEQVLRGDLDFASDPWPQISESAKDLVKKMLVRDPRRRLTAHQVLCHPWIQVDGVAPDKPLDSAVLSRLKQFSAMNKLKKMALIVIAESLSEEEIAGLKEMFKMIDTDNSGQITFDELKAGLKRVGANLKESEIYDLMHAADIDNSGTIDYCEFIAATLHLNKIEREDHLFAAFSYFDKDGSGYITQDELQQACDEFGIGDIHLEEIIREIDEDNDGRIDYNEFVAMMQKGNAPIVGRKGLEHSFSIGFREALK 584
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal9g1009 584 ProSitePatterns EF-hand calcium-binding domain. 472 484 IPR018247 -
Lal9g1009 584 CDD EFh 428 487 IPR002048 GO:0005509
Lal9g1009 584 PANTHER CALCIUM-DEPENDENT PROTEIN KINASE 2 66 569 - -
Lal9g1009 584 CDD STKc_CAMK 121 379 - -
Lal9g1009 584 Gene3D Phosphorylase Kinase; domain 1 124 207 - -
Lal9g1009 584 PANTHER SERINE/THREONINE-PROTEIN KINASE 66 569 - -
Lal9g1009 584 ProSiteProfiles EF-hand calcium-binding domain profile. 459 494 IPR002048 GO:0005509
Lal9g1009 584 Pfam Protein kinase domain 123 380 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lal9g1009 584 ProSiteProfiles EF-hand calcium-binding domain profile. 423 458 IPR002048 GO:0005509
Lal9g1009 584 ProSitePatterns EF-hand calcium-binding domain. 436 448 IPR018247 -
Lal9g1009 584 ProSitePatterns Serine/Threonine protein kinases active-site signature. 242 254 IPR008271 GO:0004672|GO:0006468
Lal9g1009 584 ProSiteProfiles Protein kinase domain profile. 122 380 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lal9g1009 584 SUPERFAMILY EF-hand 420 560 IPR011992 -
Lal9g1009 584 ProSitePatterns EF-hand calcium-binding domain. 542 554 IPR018247 -
Lal9g1009 584 CDD EFh 499 559 IPR002048 GO:0005509
Lal9g1009 584 ProSiteProfiles EF-hand calcium-binding domain profile. 495 530 IPR002048 GO:0005509
Lal9g1009 584 MobiDBLite consensus disorder prediction 28 99 - -
Lal9g1009 584 Gene3D - 405 564 - -
Lal9g1009 584 Pfam EF-hand domain pair 498 559 IPR002048 GO:0005509
Lal9g1009 584 Pfam EF-hand domain pair 428 488 IPR002048 GO:0005509
Lal9g1009 584 ProSitePatterns EF-hand calcium-binding domain. 508 520 IPR018247 -
Lal9g1009 584 Gene3D Transferase(Phosphotransferase) domain 1 208 404 - -
Lal9g1009 584 SMART serkin_6 122 380 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lal9g1009 584 ProSitePatterns Protein kinases ATP-binding region signature. 128 155 IPR017441 GO:0005524
Lal9g1009 584 SUPERFAMILY Protein kinase-like (PK-like) 121 381 IPR011009 -
Lal9g1009 584 MobiDBLite consensus disorder prediction 28 47 - -
Lal9g1009 584 SMART efh_1 499 527 IPR002048 GO:0005509
Lal9g1009 584 SMART efh_1 533 561 IPR002048 GO:0005509
Lal9g1009 584 SMART efh_1 427 455 IPR002048 GO:0005509
Lal9g1009 584 SMART efh_1 463 491 IPR002048 GO:0005509
Lal9g1009 584 MobiDBLite consensus disorder prediction 74 90 - -
Lal9g1009 584 ProSiteProfiles EF-hand calcium-binding domain profile. 533 564 IPR002048 GO:0005509
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal9g1009 Lal-Chr9 7853900 7858537 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal9g1009 1 580 EF-hand Containing Proteins AT5G04870 74.551 0.0 917
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CDPK Lal9g1009 Pkinase 1e-74 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal9g1009 K13412 - gmx:100819792 978.393
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal2g1092 2 7711820 7717842 Lal9g1009 9 7853900 7858537 LSH
Lal9g1009 9 7853900 7858537 Lal1g0982 1 7505602 7510746 LSH
Lal11g1288 11 16538355 16542097 Lal9g1009 9 7853900 7858537 PCT