Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal9g1000 ATGACAACAACACAAGAAACTTGTTCAAACTTGGATCTGATACGCCAACATCTATTAGGAGATATCTCAGATTCCATTTTCCACACCAATAATCTCCACCCTGTGAAACTTGAAGACCCTTTACAAGACTTCAATTTCAGTTCATATATTTCAGACCATAGCAGCCTCTACAGTTTCATTGAAGAGTATGATTTGGTAGCTGATATGGAGTTTATTGATCATAGTTCTTCTTCAAAAAAGGTTCTGAAGTCCATAGGAACAAGCCCCACAAATGATACAGAAAAGTGCAATTCCCATGAACCAATAGTATTATCAGAGAAGAAGGATGAAAAACAAGAATTTGGTGATGAAGGGAAGCGTTATAGAGGAGTGAGGAGAAGGCCATGGGGTAAGTATGCTGCAGAGATCCGTGACCCTACAAGGAAAGGGTGTAGGGTATGGTTAGGTACATTTGATAGAGAAATTGATGCTGCTAAGGCTTATGATTGTGCTGCTTTCAAGATGAGGGGTCAGAAAGCTATATTGAACTTTCCTCTAGAGGCTGGAGAGTCTGATCCAAAGCCAAACAATTTTGGAAGAAAAAGAAGAAGAGTCAGTGGATCTGTGATGCCTCTAGTTCAATAA 624 0.3958 MTTTQETCSNLDLIRQHLLGDISDSIFHTNNLHPVKLEDPLQDFNFSSYISDHSSLYSFIEEYDLVADMEFIDHSSSSKKVLKSIGTSPTNDTEKCNSHEPIVLSEKKDEKQEFGDEGKRYRGVRRRPWGKYAAEIRDPTRKGCRVWLGTFDREIDAAKAYDCAAFKMRGQKAILNFPLEAGESDPKPNNFGRKRRRVSGSVMPLVQ 207
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal9g1000 207 PRINTS Ethylene responsive element binding protein signature 121 132 IPR001471 GO:0003700|GO:0006355
Lal9g1000 207 PRINTS Ethylene responsive element binding protein signature 160 180 IPR001471 GO:0003700|GO:0006355
Lal9g1000 207 MobiDBLite consensus disorder prediction 180 207 - -
Lal9g1000 207 ProSiteProfiles AP2/ERF domain profile. 120 178 IPR001471 GO:0003700|GO:0006355
Lal9g1000 207 Gene3D AP2/ERF domain 119 180 IPR036955 GO:0003700|GO:0006355
Lal9g1000 207 SMART rav1_2 120 184 IPR001471 GO:0003700|GO:0006355
Lal9g1000 207 CDD AP2 119 178 IPR001471 GO:0003700|GO:0006355
Lal9g1000 207 Pfam AP2 domain 120 170 IPR001471 GO:0003700|GO:0006355
Lal9g1000 207 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 6 199 - -
Lal9g1000 207 SUPERFAMILY DNA-binding domain 120 180 IPR016177 GO:0003677
Lal9g1000 207 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF105 6 199 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal9g1000 Lal-Chr9 7771493 7772116 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal9g1000 105 197 AP2-EREBP Transcription Factor Family AT5G07580 64.516 2.72e-38 129
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Lal9g1000 AP2 2.6e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal9g1000 - - ccaj:109813158 269.24