Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal9g0977 ATGGAAGACAAGGAAGAACAGAATATGGTTCCATTTCCATCACCATCATCAGAGACAGTGACCCAAGTCAAAGGCTTTGAAAGCTTTCGGAGCACCAATGCTACTGTTACTAATGCTGATGGCTCAGACAGCTTCTATATGAAACTCACCGAGTTGTTGGATTCCTCTGGACTCAGTTTAATTGTCAATGTCAGAGAAACATTGCTGGACTTGTACCTGTTTTACTTGGAGGTTACCAAAAGAGGAGGGTATCATCAGGTTGCTAGAGAAAAGAAATGGGGTGAAGTTGTCACTGCCTTAAAATTGGAAGGATGTAACGCGAAGTTATCTGGCCAAGTTGAAAGGCTTTATGCGCGTTTTCTTTACCAATACGAGCGATTATACTTCTACCGATGTCCTTCAAAACATTCTGCTGCGGCTAGCAGCAACAAAGGTTCATTGAAGGGTAAGTGGAAATCAAGAGCTAGTCTATCTCAGCTAAAAAATATTCAAGATGGTGAAATGGTGACAAAAATGTGCCCTTATCACTCTTGTCAAACTACAGGGGATGAATCTATAGGACAGCAACTGGTTCTATCCACCCCTTCCATTGGCGACGAAAAGAAGAAACGCCGAGGTGCTCCCCTAGGAAGCAATGGATATCAGATTTTCCTCAAGAAGGAATGCGCTCGATTGAAATCTTCTGGTCAGGTCTCGGATGGCACAAACATTCTACGCATGGCTACTGATGCATGGAACAAGATGTCGGAAACTGAGAAACAGCCTTATGTAGAGGAAAGCAAGAAGAGGAAGGAAAAATGTAAGGAAGCAATGATGAGTGACACTAAACAGCAAAATAGCATGGATTGGAAGGGGACTAGTGTTAGTGGTGACTACTATGTAACTTTGCTACCAGAGACAAATAAGTAG 909 0.4268 MEDKEEQNMVPFPSPSSETVTQVKGFESFRSTNATVTNADGSDSFYMKLTELLDSSGLSLIVNVRETLLDLYLFYLEVTKRGGYHQVAREKKWGEVVTALKLEGCNAKLSGQVERLYARFLYQYERLYFYRCPSKHSAAASSNKGSLKGKWKSRASLSQLKNIQDGEMVTKMCPYHSCQTTGDESIGQQLVLSTPSIGDEKKKRRGAPLGSNGYQIFLKKECARLKSSGQVSDGTNILRMATDAWNKMSETEKQPYVEESKKRKEKCKEAMMSDTKQQNSMDWKGTSVSGDYYVTLLPETNK 302
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal9g0977 302 ProSiteProfiles ARID domain profile. 39 129 IPR001606 GO:0003677
Lal9g0977 302 Pfam HMG-box domain 211 272 IPR009071 -
Lal9g0977 302 CDD HMGB-UBF_HMG-box 212 271 - -
Lal9g0977 302 SUPERFAMILY ARID-like 42 131 IPR036431 GO:0003677
Lal9g0977 302 SUPERFAMILY HMG-box 198 281 IPR036910 -
Lal9g0977 302 SMART ARID_2 36 125 - -
Lal9g0977 302 SMART bright_3 40 130 IPR001606 GO:0003677
Lal9g0977 302 PANTHER HIGH MOBILITY GROUP B PROTEIN 9 1 301 - -
Lal9g0977 302 PANTHER HMG (HIGH MOBILITY GROUP) BOX PROTEIN 1 301 - -
Lal9g0977 302 Pfam ARID/BRIGHT DNA binding domain 43 125 IPR001606 GO:0003677
Lal9g0977 302 Gene3D - 18 148 IPR036431 GO:0003677
Lal9g0977 302 Gene3D High mobility group box domain 196 287 IPR036910 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal9g0977 Lal-Chr9 7534290 7537682 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal9g0977 45 272 ARID Transcription Factor Family AT3G13350 25.188 3.66e-14 70.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR ARID Lal9g0977 ARID 1.9e-12 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal9g0977 - - var:108325455 283.108