Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal9g0962 ATGTCAGGGAAAGAAGAGAATCGAATATTCGTCGGAGGTTTGTCTTCCGACGTTTCCGAACGTCAGCTCCACCGTGCTTTCGATCGTTACGGCAAGATTCTTGAATGTCAGAATACGGAGAGTGAAAGAGCAAGGACAACAAATCACAAGGAGCAAGGACTAAGGAGTGAAAGAGAAAGGCTGAAACTGATGATGGTTGAAAGAGATACAGGCCGTCCACGTGGATTTGGGTTTATTACATTTGCTGACCGTCGGGGAATGGAGGACGCAATGAAGGAAATGCATGGACGGGAGCTTGGTGATCACGCCATCTCTGTCAATAAGGCCCAGCCAAAAATGGGGTCTGATGATGCTGACTATGATTACAGAAGTAGCTACCCATCTGGTGGCAGGGGAAGCTATAGGGTGGGAGACAGGACAGGACAAGATGACTGCTTCAAATGTGGGCGTCCCGGGCACTGGGCCCGTGATTGCCCTATGGCAGGTGGTGGTCGGGGTGGTGGTGGATCATTTTCTTCACGCCCTAGGTTTGGAGTTGCCGGTGGCCTTGGGGATCACCTAAGCAATGAACGTGAATGCTATGCTGATGATCGTTATGATGGAAGACGTTATAGAGATGGGGATCGTTATGATGATCGTTATGGCAGCCATGACCGCCATACCAGTGACAGGTATCCAACAAATGGTGATCGTTTTGGAAGTGGTAGAAATGGTGGTTCTGATCGTTACCCGCAAAATGGTCATGGCAAAGATAGAGGCTACGATTGGCTAGTTGCTCCATGTGGAGGTGCTGCCAATAGATATGGTGGTGGAATGCCAGCAAGAGATGAAGGAAGGAATTATAGGAGCAGCAGGCCAGGTCCATATGACCGCCCTAGTAGGGGTGCTCGTCCGTCTTCATTTGATCGTTACTGA 915 0.4973 MSGKEENRIFVGGLSSDVSERQLHRAFDRYGKILECQNTESERARTTNHKEQGLRSERERLKLMMVERDTGRPRGFGFITFADRRGMEDAMKEMHGRELGDHAISVNKAQPKMGSDDADYDYRSSYPSGGRGSYRVGDRTGQDDCFKCGRPGHWARDCPMAGGGRGGGGSFSSRPRFGVAGGLGDHLSNERECYADDRYDGRRYRDGDRYDDRYGSHDRHTSDRYPTNGDRFGSGRNGGSDRYPQNGHGKDRGYDWLVAPCGGAANRYGGGMPARDEGRNYRSSRPGPYDRPSRGARPSSFDRY 304
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal9g0962 304 SMART rrm1_1 8 107 IPR000504 GO:0003723
Lal9g0962 304 Gene3D - 142 182 - -
Lal9g0962 304 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 9 38 IPR000504 GO:0003723
Lal9g0962 304 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 66 104 IPR000504 GO:0003723
Lal9g0962 304 PANTHER GLYCINE-RICH RNA-BINDING PROTEIN RZ1B-LIKE 64 265 - -
Lal9g0962 304 PANTHER GLYCINE-RICH RNA-BINDING PROTEIN RZ1B-LIKE 1 37 - -
Lal9g0962 304 SUPERFAMILY Retrovirus zinc finger-like domains 132 164 IPR036875 GO:0003676|GO:0008270
Lal9g0962 304 MobiDBLite consensus disorder prediction 204 226 - -
Lal9g0962 304 Gene3D - 1 141 IPR012677 -
Lal9g0962 304 Pfam Zinc knuckle 145 159 IPR001878 GO:0003676|GO:0008270
Lal9g0962 304 PANTHER TRANSFORMER-2-RELATED 64 265 - -
Lal9g0962 304 PANTHER TRANSFORMER-2-RELATED 1 37 - -
Lal9g0962 304 SMART c2hcfinal6 144 160 IPR001878 GO:0003676|GO:0008270
Lal9g0962 304 MobiDBLite consensus disorder prediction 204 304 - -
Lal9g0962 304 SUPERFAMILY RNA-binding domain, RBD 4 116 IPR035979 GO:0003676
Lal9g0962 304 ProSiteProfiles Zinc finger CCHC-type profile. 145 159 IPR001878 GO:0003676|GO:0008270
Lal9g0962 304 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 7 111 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal9g0962 Lal-Chr9 7369927 7375719 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal9g0962 9 92 C2H2 Transcription Factor Family AT2G19380 29.762 4.32e-06 46.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal9g0962 - - gmx:100809519 356.681