Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal9g0937 ATGGGAAAAGAGAAAGTTCACATTAACATTGTGGTAATTGGTCATGTTGACTCTGGAAAGTCAACTACCACTGGCCACTTGATATACAAGCTTGGGGGTATTGACAAGCGTGTTATTGAGAGATTTGAGAAGGAAGCTGCTGAGATGAACAAGAGGTCTTTCAAGTATGCCTGGGTTCTTGACAAGCTTAAGGCTGAGCGTGAAAGAGGAATCACAATTGATATTGCCCTCTGGAAGTTTGAGACCACCAAGTACTACTGCACTGTCATTGATGCTCCCGGACACAGGGATTTCATTAAGAACATGATTACTGGAACATCACAAGCTGACTGCGCCGTTCTTATAATTGACTCCACCACTGGTGGTTTTGAAGCTGGTATTTCTAAGGATGGACAGACTCGTGAGCATGCTCTTCTTGCTTTCACCCTTGGTGTGAAGCAGATGATTTGCTGCTGTAACAAGATGGATGCTACTACTCCCAAGTACTCCAAGGCTAGGTATGATGAAATTGTGAAGGAAGTCTCATCCTACTTGAAGAAGGTTGGGTATAACCCAGACAAGATTCCTTTTGTTCCAATCTCTGGATTTGAGGGTGACAACATGATTGAGAGGTCCACAAACCTTGACTGGTACAAGGGTCCTACCCTTCTTGAGGCCCTTGACCAAATCAATGAGCCCAAGAGGCCATCAGACAAGCCCCTCCGTTTGCCCCTTCAGGATGTCTACAAGATTGGAGGAATCGGAACTGTGCCAGTGGGACGTGTTGAAACTGGTGTTCTGAAACCTGCAATGGTGGTGACTTTTGCACCAAGTGGGCTGACAACTGAGGTTAAGTCTGTGGAGATGCACCACGAGGCCCTCCAAGAGGCCCTTCCAGGTGACAATGTGGGGTTCAATGTTAAGAATGTTGCCGTCAAGGATCTCAAGCGTGGTTATGTTGCTTCAAACTCCAAGGATGATCCTGCTAAGGAGGCTGCAAGCTTTATCTCTCAGGTTATCATAATGAATCACCCTGGTCAGATTGGAAATGGCTATGCCCCGGTTCTTGACTGCCACACCTCCCACATTGCTGTCAAGTTTGCTGAGCTAGTGACCAAGATCGACAGGCGATCTGGCAAAGAGCTTGAGAAGGAGCCCAAATTCTTGAAGAATGGTGATGCTGGTTTTGTTAAGATGATTCCCACCAAACCTATGGTGGTCGAAACTTTCTCTGGGTATCCTCCACTTGGTCGTTTTGCTGTGAGGGACATGCGTCAAACTGTGGCTGTGGGAGTTATCAAGAGTGTGGAGAAGAAGGACCCTTCTGGGGGAGGCAAGGTAACGAAGGCTGCACAGAAGAAGGTTGTTAAAATCTTCCGTTATGGTTACAATAAATTTTGGCATCTGGCCAATAGCACTTTTTGTTCTTGTTTAGATAATTTGTCAATGGGAAGTGTCAAGTCTCCGCCTTCATCTCGCAACCATTGTTCCCAGAACTGGGTTCTTGATAGGCGGTGGCATGGCTTT 1506 0.4648 MGKEKVHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPDKIPFVPISGFEGDNMIERSTNLDWYKGPTLLEALDQINEPKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPAMVVTFAPSGLTTEVKSVEMHHEALQEALPGDNVGFNVKNVAVKDLKRGYVASNSKDDPAKEAASFISQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFAELVTKIDRRSGKELEKEPKFLKNGDAGFVKMIPTKPMVVETFSGYPPLGRFAVRDMRQTVAVGVIKSVEKKDPSGGGKVTKAAQKKVVKIFRYGYNKFWHLANSTFCSCLDNLSMGSVKSPPSSRNHCSQNWVLDRRWHGF 502
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal9g0937 502 PRINTS GTP-binding elongation factor signature 9 22 IPR000795 GO:0003924|GO:0005525
Lal9g0937 502 PRINTS GTP-binding elongation factor signature 68 76 IPR000795 GO:0003924|GO:0005525
Lal9g0937 502 PRINTS GTP-binding elongation factor signature 88 98 IPR000795 GO:0003924|GO:0005525
Lal9g0937 502 PRINTS GTP-binding elongation factor signature 104 115 IPR000795 GO:0003924|GO:0005525
Lal9g0937 502 PRINTS GTP-binding elongation factor signature 148 157 IPR000795 GO:0003924|GO:0005525
Lal9g0937 502 Gene3D Translation factors 229 316 - -
Lal9g0937 502 PANTHER TRANSLATION FACTOR 1 448 - -
Lal9g0937 502 CDD EF1_alpha_II 230 320 - -
Lal9g0937 502 Hamap Elongation factor Tu [tuf]. 2 432 IPR004539 GO:0003746|GO:0005525|GO:0006414
Lal9g0937 502 Pfam Elongation factor Tu GTP binding domain 6 222 IPR000795 GO:0003924|GO:0005525
Lal9g0937 502 Pfam Elongation factor Tu domain 2 248 313 IPR004161 GO:0005525
Lal9g0937 502 ProSitePatterns Translational (tr)-type guanine nucleotide-binding (G) domain signature. 61 76 IPR031157 -
Lal9g0937 502 SUPERFAMILY Translation proteins 231 321 IPR009000 -
Lal9g0937 502 Gene3D Translation factors 323 430 - -
Lal9g0937 502 ProSiteProfiles Translational (tr)-type guanine nucleotide-binding (G) domain profile. 5 230 IPR000795 GO:0003924|GO:0005525
Lal9g0937 502 PANTHER ELONGATION FACTOR 1-ALPHA-LIKE 1 448 - -
Lal9g0937 502 CDD EF1_alpha_III 323 426 - -
Lal9g0937 502 CDD EF1_alpha 9 227 - -
Lal9g0937 502 Pfam Elongation factor Tu C-terminal domain 322 429 IPR004160 -
Lal9g0937 502 Gene3D - 1 226 IPR027417 -
Lal9g0937 502 SUPERFAMILY EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain 326 429 IPR009001 -
Lal9g0937 502 TIGRFAM EF-1_alpha: translation elongation factor EF-1, subunit alpha 1 433 IPR004539 GO:0003746|GO:0005525|GO:0006414
Lal9g0937 502 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 3 249 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal9g0937 Lal-Chr9 7141559 7144094 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal9g0937 1 441 Eukaryotic Initiation Factors Gene Family AT5G60390 95.011 0.0 866
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal9g0937 K03231 - thj:104810843 870.537
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal12g0139 12 974499 976703 Lal9g0937 9 7141559 7144094 PCT
Lal13g0118 13 738503 741039 Lal9g0937 9 7141559 7144094 PCT