Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal9g0919 GTGGTGCAGCAGGTCTTTCACGGTGGACACAGTGCATCTTTCGTGGGCCCCACATTTGGTCACATACTACTTACTACTAATAACTTCATTCCAAAACCATTTTCATTCACATTTTCTTCCTCATTCATTCAACAACACACTAACTACTCTTCTTTCTTCTTCTTCTTCTTCTTCTTCTTTTCTCACTCTCAATTTTCTCACCAAACAAAAAATATCTACACAATGCAAGGTTCAAATTTTCTCGACGAAGTTGACTGCGGAAACTTCTTGGACCACATCGACGATCTTCTCGACTTCCCCGCCGATGACTCCGACGCTGCCGCCGGGAACTTTGACTTGCCGGAAAACTTATTTCCCGTCGACTCCGACTCACAGCCCAGCCCTGAATCTGTTTTAACTGACTCCGGCAATGCCTCGCCGGATATCACGGCGGAGCTCTCCGTTCCGTTTGAAGACATTGTACAATTGGAATGGCTGTCCAATTTTGTGGAGGACTCTTTCTCTGGGGGGAGCCTCACCATGAAGAAGGTAGAACCATGCTGTGGCCCTAAGGAAGATTTGGCACATACTGAATTCCAAACAGCAAGACCACTTTCTGTCATTGAAACCAGAAACTCCAGCTCTGGTGAGAAGACTGCACCTCACATTTATATCCCTGTGCCTTGTGGACGTGCACGCAGCAAGCGTCGTCGCCCTTTAACCTTCAACCCTCATCATGTCTTGCAACTCATCTCCCCTGATTCCTCTGTTGGTGAAAACATGCAGCCTAATGTCACTTCCAAGGCCTCTTTTTGTTCAGAGAAGAAGGACTTTGGGGAGTCTCAAACTGTGATCAAAGTACAAAGGCAAGCTGCTTCTGGAGAGCATAAGAAGAAAAAGAAAATCAAATTGTCATTGGCATTAGGCCAAGCTGATGGTAACCATAATTCATCATCACAAACAGTTAGGAAATGCATGCACTGTGAGATAACTAAGACACCACAGTGGAGAGCAGGACCAATGGGGCCAAAAACACTCTGCAATGCTTGTGGTGTTAGATTCAAGAAAGGCCGTTTGTTCCCTGAATACCGCCCTGCTGCAAGTCCAACATTTTGCCCATCCTTGCACTCAAATTCCCATAAGAAGGTCCTTGAAATGAGAAACAACACCAGCCAGAAATCTGGCTTTGCCATGGATTCAGACGCCTTACCCGAACTCATTCCAAACACTAACAGTAGCCTTACCCTGGAATACATGTGA 1239 0.4592 VVQQVFHGGHSASFVGPTFGHILLTTNNFIPKPFSFTFSSSFIQQHTNYSSFFFFFFFFFSHSQFSHQTKNIYTMQGSNFLDEVDCGNFLDHIDDLLDFPADDSDAAAGNFDLPENLFPVDSDSQPSPESVLTDSGNASPDITAELSVPFEDIVQLEWLSNFVEDSFSGGSLTMKKVEPCCGPKEDLAHTEFQTARPLSVIETRNSSSGEKTAPHIYIPVPCGRARSKRRRPLTFNPHHVLQLISPDSSVGENMQPNVTSKASFCSEKKDFGESQTVIKVQRQAASGEHKKKKKIKLSLALGQADGNHNSSSQTVRKCMHCEITKTPQWRAGPMGPKTLCNACGVRFKKGRLFPEYRPAASPTFCPSLHSNSHKKVLEMRNNTSQKSGFAMDSDALPELIPNTNSSLTLEYM 412
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal9g0919 412 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 316 375 - -
Lal9g0919 412 SMART GATA_3 312 362 IPR000679 GO:0006355|GO:0043565
Lal9g0919 412 CDD ZnF_GATA 317 364 IPR000679 GO:0006355|GO:0043565
Lal9g0919 412 ProSitePatterns GATA-type zinc finger domain. 318 343 IPR000679 GO:0006355|GO:0043565
Lal9g0919 412 PANTHER GATA TRANSCRIPTION FACTOR 75 412 - -
Lal9g0919 412 PANTHER GATA TRANSCRIPTION FACTOR 8 75 412 - -
Lal9g0919 412 MobiDBLite consensus disorder prediction 118 138 - -
Lal9g0919 412 Pfam GATA zinc finger 318 351 IPR000679 GO:0006355|GO:0043565
Lal9g0919 412 MobiDBLite consensus disorder prediction 120 138 - -
Lal9g0919 412 ProSiteProfiles GATA-type zinc finger domain profile. 312 348 IPR000679 GO:0006355|GO:0043565
Lal9g0919 412 Gene3D - 312 362 IPR013088 GO:0006355|GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal9g0919 Lal-Chr9 6946862 6950989 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal9g0919 93 386 C2C2-Gata Transcription Factor Family AT4G32890 36.424 1.23e-44 155
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Lal9g0919 GATA 2.3e-15 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal9g0919 - - gmx:100792644 428.328
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal9g0919 9 6946862 6950989 Lal12g0159 12 1132076 1135436 PCT
Lal9g0919 9 6946862 6950989 Lal13g0136 13 875011 878704 PCT
Lal9g0919 9 6946862 6950989 Lal24g0127 24 907623 910897 PCT
Lal12g0159 12 1132076 1135436 Lal9g0919 9 6946862 6950989 PCT
Lal13g0136 13 875011 878704 Lal9g0919 9 6946862 6950989 PCT
Lal24g0127 24 907623 910897 Lal9g0919 9 6946862 6950989 PCT