Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal9g0910 AATGGAGCACTCAACTCAAAGCATCGATTGAGCTTTGAATCTGTAAGTATTGACATAATTGAAGCCTTAACTTTTAGTAGCTATTTCCATGTTAGAACTCAGAAGTTGATTTATTTGCATGGTAGAGGGGATCTTGATACCTTAGATACAGAACTTGAAATGGATTTACAAAGGAATCTTTGTGCTAACACCTGGGCAAGGTCGTGTTCGTTACCCTCTCCTGGGAATGGATTGCAGACGAGTATATCCTCAAATCCTCCCTCTTTCCCCGACTTTGGTTTGCAGCATAATCTAGACAAATGGGATGATCCATCTCTTTCAGATTATGGGGTCAGGGTAGAAGCATCTTTAAAAGAGTTTAACCAATCCTCTCAAACTCAGTGTCCACTTTCATATGACTCCAACAATCAGATTAAGAACCTTGATCAAGAAAATCGCTTGCTGAGTGACTCATCACAAACAATTAAATTACCAGATTGGGATCCAAGTGTGATGTTGAATAACCTTTCCTTTCTGGAAGACAAGATCCATCAACTCCAGGATCTTGTGCGTTTGATTGTTAGTCAAACAGGCCAACCTTTTGGCCAGCCTAATCAACTTGTAACTCAGGAACAGCAGCTCGTGACAGCTGATATAACATCGGTTATTGTTCAATTGATCTCAACTGCAGGTAGTCTTCTACCTTCTGTCAGGTATACCCTTTCAAGCAGTAGTCCATTGGTTGGACAGCTTAGCCAACCTCGTGAGCTTATTGCTCTCTCCGGGTCAGGCCTGAGTAGCCGAAGTATTCAACCACAAAATAATAATGTCAGCAAATTGCCTTATCATTCCATGCCGAATGATCCATCCAATAATTGTAAAATGGAACAAAACTGCAATATGGAAGAACATGAATTAAAAGATGAAGAAGATGGAGAAGATGGAGAAAACCTTCTGCCTGGTTCCTATGAGATCTTACAATTAGAAAAAGAAGAAATCCTCGCACCTCACACGCACTTCTGTACAATTTGTGGGAAGGGATTTAAGCGAGATGCAAATCTTCGAATGCACATGCGAGGTCACGGTGATGAGTACAAAACCCCAGAAGCGCTCGCAAAACCACATAAAGAACCTGGATCTCAACCACAACTTATCAAGAGGTATTCCTGCCCTTATGGCGGCTGCAAGCGTAACAAGGATCACAAGAAGTTTCAACCGCTGAAGACTATTTTGTGTGTCAAAAACCATTACAAAAGAACACACTGTGACAGAAGTTACATTTGCAGCAGATGCAACACCAAGAAGTTTTCAGTTATGGCAGATCTTAAAACTCATGAGAAACACTGTGGTAAAGATAAATGGCTTTGTTCATGTGGCACAACATTTTCAAGGAAAGACAAACTCTTTGGACACATTGCTCTCTTCCAAGGCCATACACCAGCCATTCCCTTGGATGATACTAAAGTACCAGCTGCAGCACCGGATCAGGACTGCAAAGAAAGCGGTAAGGTAGGAAGTATGGACTTCACTTATGGATCAAATCCTTCAACTGGAAATGGAGTTCAAAATGGCATGGATGTGAAATGCAATATTGATGATCCTATCAATTATTTCTCACCATTGAACATTGATGCTAACTTTGGTGTGTTTGATGACTCAGAAACTTTATTCTCTTTTCTCATGTCTGGATCATTTAAATCTGGAGGAGACTCAAGTGCTGACAATATTTTGTAA 1713 0.4069 NGALNSKHRLSFESVSIDIIEALTFSSYFHVRTQKLIYLHGRGDLDTLDTELEMDLQRNLCANTWARSCSLPSPGNGLQTSISSNPPSFPDFGLQHNLDKWDDPSLSDYGVRVEASLKEFNQSSQTQCPLSYDSNNQIKNLDQENRLLSDSSQTIKLPDWDPSVMLNNLSFLEDKIHQLQDLVRLIVSQTGQPFGQPNQLVTQEQQLVTADITSVIVQLISTAGSLLPSVRYTLSSSSPLVGQLSQPRELIALSGSGLSSRSIQPQNNNVSKLPYHSMPNDPSNNCKMEQNCNMEEHELKDEEDGEDGENLLPGSYEILQLEKEEILAPHTHFCTICGKGFKRDANLRMHMRGHGDEYKTPEALAKPHKEPGSQPQLIKRYSCPYGGCKRNKDHKKFQPLKTILCVKNHYKRTHCDRSYICSRCNTKKFSVMADLKTHEKHCGKDKWLCSCGTTFSRKDKLFGHIALFQGHTPAIPLDDTKVPAAAPDQDCKESGKVGSMDFTYGSNPSTGNGVQNGMDVKCNIDDPINYFSPLNIDANFGVFDDSETLFSFLMSGSFKSGGDSSADNIL 570
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal9g0910 570 ProSiteProfiles Zinc finger C2H2 type domain profile. 332 359 IPR013087 -
Lal9g0910 570 PANTHER PROTEIN SENSITIVE TO PROTON RHIZOTOXICITY 1 103 554 - -
Lal9g0910 570 Gene3D Classic Zinc Finger 316 385 - -
Lal9g0910 570 SUPERFAMILY beta-beta-alpha zinc fingers 331 356 IPR036236 -
Lal9g0910 570 ProSitePatterns Zinc finger C2H2 type domain signature. 334 354 IPR013087 -
Lal9g0910 570 SMART c2h2final6 381 414 IPR013087 -
Lal9g0910 570 SMART c2h2final6 332 354 IPR013087 -
Lal9g0910 570 SMART c2h2final6 419 441 IPR013087 -
Lal9g0910 570 PANTHER PROTEIN SENSITIVE TO PROTON RHIZOTOXICITY 1 103 554 IPR044300 GO:0010044|GO:0010447
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal9g0910 Lal-Chr9 6855131 6857617 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal9g0910 299 570 C2H2 Transcription Factor Family AT1G34370 65.986 1.42e-125 369
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Lal9g0910 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal9g0910 - - gmx:100500526 719.153
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal9g0910 9 6855131 6857617 Lal9g0910 9 6855131 6857617 ECH