Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal9g0893 ATGGCGGCGGTTGCACCGGTGGGGGGTCAAACGGCGTCGCTTTACGTGGGAGATCTAGAGAGCAATGTCAACGAAGGACAATTGTACGATCTGTTCAGCCACGTGGCACAAATTGTTTCCATTAGGGTTTGTAGGGACCAAACTCAACGTTCCTCTCTTGGCTACGCTTATGTCAATTTCCCTACCCCACTTGATGCGGCTAATGCCATGGAGCATCTTAACTTCACTCCTTTGAATGGGAAACCCATTCGTATTATGTATTCTCATAGAGATCCTAGCATGAGGAAAAGTGGATATGCAAATCTGTTCATTAAAAACCTGGATACTTCAATAGATAACAAGGGATTACATGACACATTTGCTTCCTTTGGAACCATACTTTCTTGTAAGGTAGCTCTTGATAGCAGTGGTCAGTCAAAAGGGTACGGTTTTGTACAGTTTGATAATGACGAGTCTGCACAAACTGCCATCAATAAGTTGAATGGCATGTTATTAAATGATAAAAAAGTCTATGTTGGACTCTTCGTTCGGCGCCAGGAAAGAGCCCCATCAAATGGATCACCAAAGTTCACAAATGTGTATGTGAAAAATTTGTCTGAAGTATATACTGATGAGGACCTGAAGCAGCTGTTTGGCCCTTATGGTTCAATAACTAGTGCTGTGGTCATGAAAGACATGAATGGGAAGTCTAGGTGCTTTGGTTTTGTGAATTTCCATAGTCCAGATTCAGCAGCTGCTGCAGTTGAGAGGTTAAATGGAACTCCAACCAACCGTGAGAAGGTTTTATTTGTGGGGAGAGCTCAGAGTAAGGCAGAAAGAGAAGCTGATTTAAAAGCCAAATTTGAGCAGGAAAGAATAGGCAGATATGAGAAATTACAAGGTGCTAATTTATACCTGAAAAATCTGGATGATAGTGTCACTGATGATAACTTGAAGGAGCTATTTTCTGAGTTTGGAACAATTACATCTTCCAAGGTGATGGTTGATACACTTGGGCATAGCAAGGGCGCCGGTTTTGTGTCCTTTTCTACCCCCGAGGAAGCAAATAAAGCTTTGCATGAAATGAATGGAAAGATGATTGGACGGAAGCCTCTGTATGTTGCTGTGGCCCAGCGCAAAGAAGAGAGGAAGGCTCGTTTGCAGGCTCAGTTTTCGCAAATCCGAGCGCCAGGTGCAGTTGCACCTCTTCCCGCAGGAATTCTTGGATATCATCCAGGGACACCAAGATTTACCCCTCAACAGTTGTACTATGGACAAGGTACACCTGGTCTCGTACCGCCTCAGCCAGCAGGTTATGGTTTTCAGCAGCAACTTGTGCCTGGAATGCGTCCTGGTGTTTCTCCTAATTATATTATGCCATACCAACTTCAGAGACAGGGTCAGCCTGTGCAGAGGGTGGGTGTTAGACGAGCTGGAAACAATCAAGTGCAGCAGAACCAGATGCTACATCGTAACTCCAACCAAGGGTTTACGTATATGGCTAATGGTCAAAATGGCATGGATCCATCAGCAGTTCCCCAAGGTCTCGCTGGTCCTGTGATGCCATTACCCTTTGATGGTTCTGGAGTTAATGCAGATCCTAATGGTCATCATCCTGGAGCATTGTCTAACACACTTGCCTCGGCTTTGGCCTCTGCTACACCAGAAAATCAGCGTATGATGCTGGGTGAACATCTGTATCCGCTCGTGGGTCGTCTTACGCCAAGCAACCAGACGGCAAAGGTGACAGGAATGTTGCTGGAAATGGACAAGTCAGAGGTAATCCATCTGATTGAATCTCCTGAGGAGTTGAAGATGAAGGTGATTGAGGCAATGCAAGTCCTTCATGAAGCAGGACCGGGTTCTGATGTTGGTGATCAGCTTGGCTCATTATCATTGAATGAGTGA 1887 0.4526 MAAVAPVGGQTASLYVGDLESNVNEGQLYDLFSHVAQIVSIRVCRDQTQRSSLGYAYVNFPTPLDAANAMEHLNFTPLNGKPIRIMYSHRDPSMRKSGYANLFIKNLDTSIDNKGLHDTFASFGTILSCKVALDSSGQSKGYGFVQFDNDESAQTAINKLNGMLLNDKKVYVGLFVRRQERAPSNGSPKFTNVYVKNLSEVYTDEDLKQLFGPYGSITSAVVMKDMNGKSRCFGFVNFHSPDSAAAAVERLNGTPTNREKVLFVGRAQSKAEREADLKAKFEQERIGRYEKLQGANLYLKNLDDSVTDDNLKELFSEFGTITSSKVMVDTLGHSKGAGFVSFSTPEEANKALHEMNGKMIGRKPLYVAVAQRKEERKARLQAQFSQIRAPGAVAPLPAGILGYHPGTPRFTPQQLYYGQGTPGLVPPQPAGYGFQQQLVPGMRPGVSPNYIMPYQLQRQGQPVQRVGVRRAGNNQVQQNQMLHRNSNQGFTYMANGQNGMDPSAVPQGLAGPVMPLPFDGSGVNADPNGHHPGALSNTLASALASATPENQRMMLGEHLYPLVGRLTPSNQTAKVTGMLLEMDKSEVIHLIESPEELKMKVIEAMQVLHEAGPGSDVGDQLGSLSLNE 628
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal9g0893 628 CDD RRM2_I_PABPs 98 173 IPR045305 -
Lal9g0893 628 SUPERFAMILY PABC (PABP) domain 489 611 IPR036053 GO:0003723
Lal9g0893 628 TIGRFAM PABP-1234: polyadenylate binding protein, human types 1, 2, 3, 4 family 12 608 IPR006515 GO:0003723
Lal9g0893 628 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 14 84 IPR000504 GO:0003723
Lal9g0893 628 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 193 259 IPR000504 GO:0003723
Lal9g0893 628 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 102 170 IPR000504 GO:0003723
Lal9g0893 628 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 297 365 IPR000504 GO:0003723
Lal9g0893 628 Gene3D - 534 612 - -
Lal9g0893 628 SMART poly_2 547 611 IPR002004 GO:0003723
Lal9g0893 628 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 191 269 IPR000504 GO:0003723
Lal9g0893 628 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 295 372 IPR000504 GO:0003723
Lal9g0893 628 PANTHER POLYADENYLATE-BINDING PROTEIN 11 616 - -
Lal9g0893 628 Gene3D - 101 174 IPR012677 -
Lal9g0893 628 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 100 177 IPR000504 GO:0003723
Lal9g0893 628 Pfam Poly-adenylate binding protein, unique domain 543 608 IPR002004 GO:0003723
Lal9g0893 628 SMART rrm1_1 13 86 IPR000504 GO:0003723
Lal9g0893 628 SMART rrm1_1 192 265 IPR000504 GO:0003723
Lal9g0893 628 SMART rrm1_1 296 368 IPR000504 GO:0003723
Lal9g0893 628 SMART rrm1_1 101 173 IPR000504 GO:0003723
Lal9g0893 628 ProSiteProfiles Poly(A)-binding protein C-terminal (PABC) domain profile. 535 613 IPR002004 GO:0003723
Lal9g0893 628 SUPERFAMILY RNA-binding domain, RBD 190 376 IPR035979 GO:0003676
Lal9g0893 628 CDD RRM3_I_PABPs 190 270 - -
Lal9g0893 628 SMART rrm2_1 296 368 IPR003954 GO:0003676
Lal9g0893 628 SMART rrm2_1 101 173 IPR003954 GO:0003676
Lal9g0893 628 SMART rrm2_1 13 86 IPR003954 GO:0003676
Lal9g0893 628 SMART rrm2_1 192 264 IPR003954 GO:0003676
Lal9g0893 628 CDD RRM4_I_PABPs 294 372 - -
Lal9g0893 628 Gene3D - 7 100 IPR012677 -
Lal9g0893 628 CDD RRM1_I_PABPs 13 92 - -
Lal9g0893 628 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 12 90 IPR000504 GO:0003723
Lal9g0893 628 Gene3D - 278 381 IPR012677 -
Lal9g0893 628 Gene3D - 176 277 IPR012677 -
Lal9g0893 628 PANTHER RNA BINDING PROTEIN 11 616 - -
Lal9g0893 628 SUPERFAMILY RNA-binding domain, RBD 12 180 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal9g0893 Lal-Chr9 6680102 6686166 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal9g0893 12 622 Eukaryotic Initiation Factors Gene Family AT1G71770 58.692 0.0 689
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal9g0893 K13126 - gmx:100783163 979.163