Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal9g0875 ATGTGCTTTCAAACGGTGGCGCACCAAAGGGGTTCAGGTGAGTTCATCAGATTCACCGGTGGCGGTGGAAGTGATGAAAAACATGATGGTGAAAGTTCTAGGTCACCTGAGTCACTGGGATTGAACCAAGATGAGGTTTCAATGCAAGGTTCTTCTATGGCTTCAGGTTACAACATGGCAAGAGAGTCCACAGAAATGGTTTCAGGTCTGACTCATGTGGCCTCAAGATCAAGCCTTGGAGGCACTAACTGGGTTCCGGTCCAGGGAAGTAGTGGTTTTCCTATGATGTCTGGTTATGGACATGTTGTATCTACTTCACCTAGTACTTTGTCTTCTTTCTATTCTGGTTCTGATTTGGTTTCTGGGTCATGGGTTGGGCACAAAAGAGGGCGTGAAGAAGAAAGTAGTGGTGGTTTTCATCAGTTGATGCAACAAGCTGACCCTAAACACTTCAGACCCATTGGTGATTTCAGGGTACCTACACAAGGAGAATCATCATCATTATCAGTGATAAAAGAAGCTGCCACCACCACCACCACTGAATTGACCGTGGCCACCACTACATCGGCGACAGGATCAATCGAAACAGCATCGAATGAAGAAGCGAGAGAGAGGAGAAGGTACAGGGGAGTGAGGCAGAGGCCATGGGGAAAATGGGCAGCAGAAATTCGTGATCCACACAAAGCAGCAAGAGTTTGGCTTGGCACATTTGATACAGCAGAAGCAGCAGCAAGAGCTTATGATGAAGCTGCATTGAGGTTCAGAGGAAACAGAGCAAAGCTTAACTTCCCTGAAGATATTAGAGCATTGGCAGTGCCACCACCTCTTCACAATTTTCCAGCCACCACACGGCTCACCGCTGCCACCTCTGGCACTCATTTCCTGCAGCCCCCAGCCGCAATTGCGACACTGCCACAATTGCAGCCAAGTTTCATGCAACAGCAGCAGCCATTACTTCAGGGGTCCTCTGATTTGATCAGAGACTATTGGCAATATTCTCAGATTCTCCAAAGTTCTAGTGATTTTAATCAACAACAATTACAACAACTACAACAACAACCTTCTAGTTTGTTGCAGCAGTGGTACTATAATTCACAATTGGCTTCACTTCAATCATCTTCATTGTTATCATCACCAGCATCTCTATCTTCTTCTATGTCAACAAATGCATCATTTTCACCATCTACTCAATTTTCCTCTGCGTCATTTCCCATGTTTTCTGGTCAACAAATGGACTATTTCCGGCCACCAGGGAACCACCCTCAAGGTGGTGGAAGCGGTGGCAGCGGATCTGAGTTTCCACCATCAACTTGGTCAGATACCAGTGGCTATCCTCCACCTCCTAGTTGA 1350 0.4652 MCFQTVAHQRGSGEFIRFTGGGGSDEKHDGESSRSPESLGLNQDEVSMQGSSMASGYNMARESTEMVSGLTHVASRSSLGGTNWVPVQGSSGFPMMSGYGHVVSTSPSTLSSFYSGSDLVSGSWVGHKRGREEESSGGFHQLMQQADPKHFRPIGDFRVPTQGESSSLSVIKEAATTTTTELTVATTTSATGSIETASNEEARERRRYRGVRQRPWGKWAAEIRDPHKAARVWLGTFDTAEAAARAYDEAALRFRGNRAKLNFPEDIRALAVPPPLHNFPATTRLTAATSGTHFLQPPAAIATLPQLQPSFMQQQQPLLQGSSDLIRDYWQYSQILQSSSDFNQQQLQQLQQQPSSLLQQWYYNSQLASLQSSSLLSSPASLSSSMSTNASFSPSTQFSSASFPMFSGQQMDYFRPPGNHPQGGGSGGSGSEFPPSTWSDTSGYPPPPS 449
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal9g0875 449 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF110 57 410 - -
Lal9g0875 449 PANTHER DNA-BINDING DOMAIN 57 410 IPR044808 GO:0003700|GO:0009873
Lal9g0875 449 MobiDBLite consensus disorder prediction 409 449 - -
Lal9g0875 449 MobiDBLite consensus disorder prediction 424 439 - -
Lal9g0875 449 PRINTS Ethylene responsive element binding protein signature 208 219 IPR001471 GO:0003700|GO:0006355
Lal9g0875 449 PRINTS Ethylene responsive element binding protein signature 230 246 IPR001471 GO:0003700|GO:0006355
Lal9g0875 449 SMART rav1_2 207 270 IPR001471 GO:0003700|GO:0006355
Lal9g0875 449 ProSiteProfiles AP2/ERF domain profile. 207 264 IPR001471 GO:0003700|GO:0006355
Lal9g0875 449 SUPERFAMILY DNA-binding domain 207 265 IPR016177 GO:0003677
Lal9g0875 449 MobiDBLite consensus disorder prediction 14 43 - -
Lal9g0875 449 Gene3D AP2/ERF domain 206 266 IPR036955 GO:0003700|GO:0006355
Lal9g0875 449 Pfam AP2 domain 207 256 IPR001471 GO:0003700|GO:0006355
Lal9g0875 449 CDD AP2 215 266 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal9g0875 Lal-Chr9 6563347 6566327 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal9g0875 206 283 AP2-EREBP Transcription Factor Family AT2G33710 74.359 1.30e-32 122
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Lal9g0875 AP2 9.1e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal9g0875 - - gmx:100804843 348.591
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal9g0875 9 6563347 6566327 Lal9g0875 9 6563347 6566327 ECH
Lal2g0987 2 6750842 6753276 Lal9g0875 9 6563347 6566327 LSH
Lal9g0875 9 6563347 6566327 Lal24g0080 24 518402 519358 PCT
Lal24g0080 24 518402 519358 Lal9g0875 9 6563347 6566327 PCT