Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal9g0874 ATGGCTGAACCTTCCAAGGTCGTTCACGTTCGAAATGTGGGACATGAGATATCTGAAAATGATTTACTTCAGCTATTTCAGCCTTTTGGAGTCATAACAAAGCTTGTGATGTTGCGTGCTAAAAATCAGGCTCTTCTCCAAATGCAAGATATTTCTTCTGCAGTTAATGCTTTACAATATTATGCAAATGTTCAGCCAAGCATAAGGGGGAGAAATGTTTATGTGCAGTTTTCCTCACATCAAGAACTAACTACAATGGATCAAAATCAAGGACGAGAAGATGAGCCAAACCGAATTCTCTTAGTTACAGTTCATCACATGATGTATCCTATAACAGTGGATGTGCTGCATCAAGTGTTTTCTCCCCATGGATATGTTGAAAAGATTGTAACGTTTCAGAAGCCAGCTGGCTTTCAGGCTCTTATCCAGTATCAATCACGTCAGAGTGCTGTTACTGCTAGAACTACACTTCAGGGACGCAATATATATGATGGCTGCTGTCAGCTGGAAATTCAGTTCTCAAACCTCGACGAATTACAAGTGCACTACAATAATGATCGTTCAAGGGACTTCACCAACCCAAATCTGCCTACGGAGCAGAAAGGCCGACATTCTCAACCTGGATATGGTGATGCAGGAAGCATGTATGGGGTCCAAGGTTCTGGAGCTAGAGGAGGTGGATTTCCACAGGTGGGCACTTTTCAAGCCATGTTAAAGTCTGCATTTGTTGCCAATGCTGCAGCAATTGCAGCTGCCTTCGGTGGAGGTTTGCCTCCTGGAATAACTGGAACAAATGACAGGTGTACTGTTCTTGTAGCAAATCTCAATCCTGATAGAATTGATGAGGATAAACTGTTCAACTTGTTCTCCATTTATGGAAATATTGTAAGAATTAAACTTCTGCGAAACAAACCAGATCATGCACTTATCCAGATGGGGGATGGTTTTCAAGCTGAATTGGCAGTACACTTTCTAAAGGGAGCAATGTTGTTCGGGAAGCAATTAGACGTTAACTTCTCGAAGTTTGCAAACATAATCCAAGGTCCAGACACCCACGAGTATGTGAATTCAAATCTCAATCGTTTTAATCGTAATGCTGCTAAAAACTACCGGTATTGCTGCTCACCTACAAAGATGATCCACTTGTCCACCCTCCCCCAAGACATCACGGAAGAGGATATCATAAACCTTCTGGAGGATCATGGAACGATTGTCAACAGCAAGGTCTTCGAGATGAATGGTAAAAAACAGGCCCTTGCTCTTTTTGAAACCGAGGAGCAAGCTACTGAAGCGCTTGTGTGCAAGCATGCAAGCTCACTTGCAGGCTCAATAATCCGAATCTCCTTTTCCCAGTTGCAGAATATATGA 1368 0.4254 MAEPSKVVHVRNVGHEISENDLLQLFQPFGVITKLVMLRAKNQALLQMQDISSAVNALQYYANVQPSIRGRNVYVQFSSHQELTTMDQNQGREDEPNRILLVTVHHMMYPITVDVLHQVFSPHGYVEKIVTFQKPAGFQALIQYQSRQSAVTARTTLQGRNIYDGCCQLEIQFSNLDELQVHYNNDRSRDFTNPNLPTEQKGRHSQPGYGDAGSMYGVQGSGARGGGFPQVGTFQAMLKSAFVANAAAIAAAFGGGLPPGITGTNDRCTVLVANLNPDRIDEDKLFNLFSIYGNIVRIKLLRNKPDHALIQMGDGFQAELAVHFLKGAMLFGKQLDVNFSKFANIIQGPDTHEYVNSNLNRFNRNAAKNYRYCCSPTKMIHLSTLPQDITEEDIINLLEDHGTIVNSKVFEMNGKKQALALFETEEQATEALVCKHASSLAGSIIRISFSQLQNI 455
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal9g0874 455 MobiDBLite consensus disorder prediction 187 202 - -
Lal9g0874 455 CDD RRM1_PTBPH3 6 80 IPR034795 -
Lal9g0874 455 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 6 80 IPR000504 GO:0003723
Lal9g0874 455 Pfam RRM-like domain 97 174 IPR021790 -
Lal9g0874 455 TIGRFAM hnRNP-L_PTB: hnRNP-L/PTB/hephaestus splicing factor family 4 451 IPR006536 GO:0003723|GO:0005634|GO:0006397
Lal9g0874 455 PANTHER MATRIN 3/NUCLEAR PROTEIN 220-RELATED 1 454 - -
Lal9g0874 455 SUPERFAMILY RNA-binding domain, RBD 3 91 IPR035979 GO:0003676
Lal9g0874 455 Gene3D - 265 360 IPR012677 -
Lal9g0874 455 SUPERFAMILY RNA-binding domain, RBD 266 451 IPR035979 GO:0003676
Lal9g0874 455 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 268 342 IPR000504 GO:0003723
Lal9g0874 455 MobiDBLite consensus disorder prediction 187 208 - -
Lal9g0874 455 Gene3D - 98 201 IPR012677 -
Lal9g0874 455 Gene3D - 362 455 IPR012677 -
Lal9g0874 455 Gene3D - 1 97 IPR012677 -
Lal9g0874 455 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 247 347 - -
Lal9g0874 455 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 378 452 IPR000504 GO:0003723
Lal9g0874 455 CDD RRM4_PTBPH3 371 449 - -
Lal9g0874 455 SMART rrm1_1 269 338 IPR000504 GO:0003723
Lal9g0874 455 SMART rrm1_1 101 170 IPR000504 GO:0003723
Lal9g0874 455 SMART rrm1_1 7 76 IPR000504 GO:0003723
Lal9g0874 455 SMART rrm1_1 379 448 IPR000504 GO:0003723
Lal9g0874 455 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 383 443 IPR000504 GO:0003723
Lal9g0874 455 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 9 59 IPR000504 GO:0003723
Lal9g0874 455 PANTHER POLYPYRIMIDINE TRACT-BINDING PROTEIN HOMOLOG 3 1 454 - -
Lal9g0874 455 SUPERFAMILY RNA-binding domain, RBD 95 197 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal9g0874 Lal-Chr9 6553234 6560923 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal9g0874 K14948 - gmx:100798234 796.193
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal9g0874 9 6553234 6560923 Lal9g0874 9 6553234 6560923 ECH
Lal9g0874 9 6553234 6560923 Lal12g0095 12 643263 649568 PCT
Lal9g0874 9 6553234 6560923 Lal13g0074 13 493045 499466 PCT
Lal9g0874 9 6553234 6560923 Lal24g0079 24 508069 514324 PCT
Lal12g0095 12 643263 649568 Lal9g0874 9 6553234 6560923 PCT
Lal13g0074 13 493045 499466 Lal9g0874 9 6553234 6560923 PCT
Lal24g0079 24 508069 514324 Lal9g0874 9 6553234 6560923 PCT