Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal9g0840 ATGGCTCATCATGAAGATTGGGATCTCTTTGCAATAGTGAGAAGTTGCAAAGGTGCCACCTTTACTACTCCTACCACTACTACTACACAAACTCCACTCACCACCACCAATATTATTACTAGATCCCCAACACCTAAAGAAGCTACTACTTTTATTACTAACCAAGAAAATGGGCCATTTTCTTTTCCTACAAATATTGTACAACCTAGGACCACTGGGTTCCAAGAACTTCAACCATTGTTCATGAACTTTAACCCCACCTCCACCATCAACACCACTAGCACTAGTGCTAATAGCATCAATCCCAATTTCATGTTTTCTGATTTTTCAGGATCCATTGAACAACAGCAACACCACCATACAACTTACACCCCCATTGGAGTACCCACTTCTAGTTTTGAAATATTCCATCAACAACAACAACACCTAGAAGAACAACCACAACATCAACAACAACAAGAACAAAAACAGCACAATCAATTGCATGTTCAAGTACCAACCACACAAACACCCAAATCAAGAAAAAGAAAAAGCCAACAGAAGAAAACAGTGTCCCATGTAACTGCTGATAACCTTTCATCAGATTTATGGGCATGGAGAAAATATGGACAAAAACCCATCAAGGGTTCTCCATATCCAAGGAATTATTATAGATGCAGTAGCTGCAAAGGATGTGCAGCAAGAAAGCAAGTAGAGAGAAGCACAACTGAACCAAACATGTTCATTATGACATACACCGGAGAACACAAGCACCCAAAACCCGCTCACCGGAACTCCCTCGCCGGAAGTACCCGGAACAAAACAACCACGACCCGTTTACCCCAAACACAAGAAAACGGGTCACCCTCTAGTATTGATGCTGTTTCTCCAACACAGCGAATTACAACATCTCTGTCGATGAATATGGATGGTGAAAAAGTCGAACCTGAATTGGCATCTGGGTCTGATGATGAAGATGTTCTGATACCAAATTCGATGGGACTTTCAGAGACAGTGTTCTTGAGTCCCAATACTGTGCCCGGGTTGGTTCTGGATTGTTCTCAAACGTCTTCCAATAATACTCGGCTTAATCCTGGTTGA 1080 0.4185 MAHHEDWDLFAIVRSCKGATFTTPTTTTTQTPLTTTNIITRSPTPKEATTFITNQENGPFSFPTNIVQPRTTGFQELQPLFMNFNPTSTINTTSTSANSINPNFMFSDFSGSIEQQQHHHTTYTPIGVPTSSFEIFHQQQQHLEEQPQHQQQQEQKQHNQLHVQVPTTQTPKSRKRKSQQKKTVSHVTADNLSSDLWAWRKYGQKPIKGSPYPRNYYRCSSCKGCAARKQVERSTTEPNMFIMTYTGEHKHPKPAHRNSLAGSTRNKTTTTRLPQTQENGSPSSIDAVSPTQRITTSLSMNMDGEKVEPELASGSDDEDVLIPNSMGLSETVFLSPNTVPGLVLDCSQTSSNNTRLNPG 359
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal9g0840 359 ProSiteProfiles WRKY domain profile. 188 254 IPR003657 GO:0003700|GO:0006355|GO:0043565
Lal9g0840 359 PANTHER WRKY TRANSCRIPTION FACTOR 30-RELATED-RELATED 5 333 IPR044810 GO:0003700
Lal9g0840 359 SUPERFAMILY WRKY DNA-binding domain 189 254 IPR036576 GO:0003700|GO:0006355|GO:0043565
Lal9g0840 359 Pfam WRKY DNA -binding domain 195 252 IPR003657 GO:0003700|GO:0006355|GO:0043565
Lal9g0840 359 MobiDBLite consensus disorder prediction 259 302 - -
Lal9g0840 359 MobiDBLite consensus disorder prediction 139 173 - -
Lal9g0840 359 PANTHER WRKY TRANSCRIPTION FACTOR 27-RELATED 5 333 - -
Lal9g0840 359 MobiDBLite consensus disorder prediction 248 317 - -
Lal9g0840 359 Gene3D WRKY domain 176 247 IPR036576 GO:0003700|GO:0006355|GO:0043565
Lal9g0840 359 SMART WRKY_cls 193 253 IPR003657 GO:0003700|GO:0006355|GO:0043565
Lal9g0840 359 MobiDBLite consensus disorder prediction 139 187 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal9g0840 Lal-Chr9 6133025 6134809 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal9g0840 172 268 WRKY Transcription Factor Family AT5G52830 81.443 1.71e-54 181
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Lal9g0840 WRKY 1.1e-24 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal9g0840 K13425 - aprc:113866622 318.931
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal6g0997 6 7112653 7114535 Lal9g0840 9 6133025 6134809 ECH
Lal22g0891 22 6973640 6975543 Lal9g0840 9 6133025 6134809 ECH
Lal16g1186 16 8155791 8157557 Lal9g0840 9 6133025 6134809 ECH
Lal9g0840 9 6133025 6134809 Lal9g0840 9 6133025 6134809 ECH
Lal2g0952 2 6378966 6380798 Lal9g0840 9 6133025 6134809 LSH