Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal9g0816 ATGTCAGTTGCAAAACTCAAGGCCTCTGGCACTCAGAATGTCACGGAAACAGAAGACAGAATAGATACCATAATCAGTCAAGTGGTTGGCATAGAACCGTTCCTTTCCTTTCCAAGGGCCAGAGACAGCCCTGTACAGTGGATTCAATTACTTCATGCTTTAAATCAGCAAGAACTTCCAGGGTGGCCTATGCTCTCCCCTCTTCCCATCAAGGTTCAATTGCTGAAGTGTGAAAAGTGCTCTCAAGAGTTTTGCTCCCCCATTAACTATAGAAGACATATACGTGTACACCACCGGCTGAAAAAGCTTGCGAAGGATTGTACAAAAAATAGGGAACTTTTAGGAGCATATTGGGATAAGCTCTCTGTGGAAGAGGCAAAGGAAGTTGTATCATTCAATAATGTAATGCTGGAGGAAGTTCCAGGATCTTCAGTTTTAAATGCTTTGACAATTCTTGTTCAAAGGCAAGTGTTTTCTCAATTTCCGCGGTCTTATATGAGAGCCGGCGCTGCCCTTTTGGATATTGTTAAATCTAATCCATCCAGTTTTCCTATATCTTCACAAGATTTGTTCAGTATTCTTGATGATGCTAGTGAAAAAACATGTTTATGTGGGACAACAGTGTCAATGCAAAGATATGTTTTTGATGGAGAGGCTGGAAAAAATGGCCTTGAACCTAAAAACCTAGTTGCATGCACAAGTTTCTTGCTAGAGCAGAAATTGGTGAATGCATGGCTTGCTGACAAGGATGCTGAAGCATTGAGGTGCCAGAAGCAGTTGGTTGAGGAGGAAGAAGCTGCTCAGAGAAGACAAGCTGAGATTTTGGAGAGGAAACGCCACAAAAAGATCAGACAAAAAGAACACAAGGTACGAGAACAAAGGCATGGGAGTGAGGCAGAAACTAAGGAGAACATTGACAGCACACTGGAAGCTTTAGCACCCGCAGAGGCATCTTTGGATACATGTGCTTTTGAAGCACAAAATCCTGATACATTTGTAGATAATGCTCATTCACATGTACCTTCCGAATGCCATGGCACTAATGAAGGAATAGTTGGAGATACTCAGTCAGGGTATGATTCAGGCACCGATAAGAATATTGTGCGACAATCAGCACATGGACATAATCAACAGACAGCAGCCGCCAAGAGGGAGGGAATGCTAAAACCACAACGGACTGTAGCCAACGGTTTGCATTCAAGCCAGAGTTCTCCAATTTCAAATCCTGACACCATTCAGAAATATGGAACCAACTATGATCAAAGTGCAGCTGCTATATTTAATTGCGGTGAAGTATGGAGTCAAAAGCCTACAAGAGAAGTTGACATGGTTTCAAAAGCTATAGTAGAGAAAGAAAGAGACCAATGTAAGAATCCTGAAGTTTTAATAGGATCTATATCTGTCACTCTTGGAAATTGCAGCCAATCGGAGGACAATGCAGTGGCAGTTCGAGAGGACGCCGTAGTTGAGAATCTTGTCAATGAGAATAGTTCTCAGGATAAACCAATGAAACCTGATTTTAACCAGAGCGGCAACAATCGTCCAACATTGAAGTTTTGGAGGCCACTTAGCAGGCATGACAATAAAAAACCATTAGCAGTTAATAGAGGTGGGCCAGAAGCTGATGCAGTTTATGTTAATGGAGATAGTCAAAATTTGTCAGGTCCAAGTAGTTTAAGGTTGTGCAGTATAGATGGCAGTGATATTGGTTCTGAGAACAATTCCCTCCATCCAGAGGGCAGAGTGGAACCAAGAAGCTTATTTTTATCCAGCCATGCTGCAAGAGAATTTCTTACACAAAGATGGAAAGAAGCTCTTTCATCAGATCATGTGAAATTGGTTATTTCCCCCATTTCTGAACCTCCTGGGCGCCAGAAGACACATGATTCCAAAGTAGTGGCAGGTCAATATTCCGACGTTGACAAATCCAATGTTCATGCAAATGCAGAGAGCCGGTTGCCTGCAACCTCAAGAGTTTCCAAGTCCAAACCCAGAGCGAAGCCTGAAAAGGGAACCAAGACAAAGTATATTCCCAAACAAAAAACCACAACCTAA 2055 0.4238 MSVAKLKASGTQNVTETEDRIDTIISQVVGIEPFLSFPRARDSPVQWIQLLHALNQQELPGWPMLSPLPIKVQLLKCEKCSQEFCSPINYRRHIRVHHRLKKLAKDCTKNRELLGAYWDKLSVEEAKEVVSFNNVMLEEVPGSSVLNALTILVQRQVFSQFPRSYMRAGAALLDIVKSNPSSFPISSQDLFSILDDASEKTCLCGTTVSMQRYVFDGEAGKNGLEPKNLVACTSFLLEQKLVNAWLADKDAEALRCQKQLVEEEEAAQRRQAEILERKRHKKIRQKEHKVREQRHGSEAETKENIDSTLEALAPAEASLDTCAFEAQNPDTFVDNAHSHVPSECHGTNEGIVGDTQSGYDSGTDKNIVRQSAHGHNQQTAAAKREGMLKPQRTVANGLHSSQSSPISNPDTIQKYGTNYDQSAAAIFNCGEVWSQKPTREVDMVSKAIVEKERDQCKNPEVLIGSISVTLGNCSQSEDNAVAVREDAVVENLVNENSSQDKPMKPDFNQSGNNRPTLKFWRPLSRHDNKKPLAVNRGGPEADAVYVNGDSQNLSGPSSLRLCSIDGSDIGSENNSLHPEGRVEPRSLFLSSHAAREFLTQRWKEALSSDHVKLVISPISEPPGRQKTHDSKVVAGQYSDVDKSNVHANAESRLPATSRVSKSKPRAKPEKGTKTKYIPKQKTTT 684
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal9g0816 684 MobiDBLite consensus disorder prediction 290 304 - -
Lal9g0816 684 MobiDBLite consensus disorder prediction 662 676 - -
Lal9g0816 684 MobiDBLite consensus disorder prediction 641 658 - -
Lal9g0816 684 ProSitePatterns Zinc finger C2H2 type domain signature. 77 98 IPR013087 -
Lal9g0816 684 PANTHER C2H2-LIKE ZINC FINGER PROTEIN 1 683 - -
Lal9g0816 684 Coils Coil 251 278 - -
Lal9g0816 684 MobiDBLite consensus disorder prediction 635 684 - -
Lal9g0816 684 MobiDBLite consensus disorder prediction 494 515 - -
Lal9g0816 684 MobiDBLite consensus disorder prediction 276 304 - -
Lal9g0816 684 SMART c2h2final6 75 97 IPR013087 -
Lal9g0816 684 ProSiteProfiles Zinc finger C2H2 type domain profile. 75 102 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal9g0816 Lal-Chr9 5901138 5908366 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal9g0816 19 681 C2H2 Transcription Factor Family AT4G25610 40.419 1.40e-137 414
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Lal9g0816 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal9g0816 - - gmx:100809067 860.136
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal9g0816 9 5901138 5908366 Lal9g0816 9 5901138 5908366 ECH
Lal2g0929 2 6245401 6252411 Lal9g0816 9 5901138 5908366 LSH
Lal9g0816 9 5901138 5908366 Lal12g0055 12 371205 378563 PCT
Lal9g0816 9 5901138 5908366 Lal13g0047 13 311230 318980 PCT
Lal12g0055 12 371205 378563 Lal9g0816 9 5901138 5908366 PCT
Lal13g0047 13 311230 318980 Lal9g0816 9 5901138 5908366 PCT