Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal9g0804 ATGAAGATGGGAAAAGCACTATGTTGTGATAAACAAGGAGTGAGGAGAGGAGCATGGACTCCAGAAGAAGATGAAGCATTGGTTGAGTATATTAAGATGAATGGCCATGGAAGTTGGCGTACACTTCCTATGCATGCAGGTCTTCTTCGATGTGGAAAAAGTTGTCGACTTAGGTGGATAAATTATCTTCGACCCGATATCAAGCGCGGACCATTTACTACGGAAGAAGAAAGTACAATTGTTCAACTTCATGGCATGCTTGGCAATAGGTGGGCTGCTATAGCATCCCAACTTCCGGGAAGAACGGACAATGAGATTAAGAACTACTGGAACACTCAATTGAAGAAGCAACTCCCTCACTCGGGACATTCCGTAGGGTCACAGCAGCCCTCTTTCAGCCCTGATCATAGTACTATTGTCAAAACTGAATCTCCTTCTATGCGTCACATGGTGCAATGGGAGAATGCCAGGGTCGAAGCCGAGGCAAGGTTGTCAATGGAATCTTCACTGCTTAATTCATGGTCAACAAGTGAATCACACCCTGATCACTTTCTTCAACTTTGGCATTCTGAGGTTGGACAGTCGTTTCGCGCGATCAAGGGAAAAGGAGGAGGAGTGTGTCAAAGTCTTGTCTCGCAGGCATCATCGTCAAAATTGGAGTCAAGTTCCGATGTCTCAGTGCAGGATAAAAACACTGGAAGCAGTGCCTTTGCAAACATGAAGCAGGAGCAAGATAGTAGCTACAAACTAAAGCTTGAAGATGGCACTGCTGAATCTGAGTTAGGCTATTATGAATTTCTTGATTCTTCTGATTCTGCATTGAATCACATGCTAGATATGAACGACGGTGAAATCGGATTCTTATGCGAGTCAGACAGTTTCCTCAATACCCTTGATGGTTAG 903 0.4441 MKMGKALCCDKQGVRRGAWTPEEDEALVEYIKMNGHGSWRTLPMHAGLLRCGKSCRLRWINYLRPDIKRGPFTTEEESTIVQLHGMLGNRWAAIASQLPGRTDNEIKNYWNTQLKKQLPHSGHSVGSQQPSFSPDHSTIVKTESPSMRHMVQWENARVEAEARLSMESSLLNSWSTSESHPDHFLQLWHSEVGQSFRAIKGKGGGVCQSLVSQASSSKLESSSDVSVQDKNTGSSAFANMKQEQDSSYKLKLEDGTAESELGYYEFLDSSDSALNHMLDMNDGEIGFLCESDSFLNTLDG 300
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal9g0804 300 SUPERFAMILY Homeodomain-like 13 110 IPR009057 -
Lal9g0804 300 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 3 288 - -
Lal9g0804 300 ProSiteProfiles Myb-like domain profile. 64 114 IPR001005 -
Lal9g0804 300 PANTHER MYB TRANSCRIPTION FACTOR MIXTA-LIKE PROTEIN 3 288 - -
Lal9g0804 300 Pfam Myb-like DNA-binding domain 69 113 IPR001005 -
Lal9g0804 300 Pfam Myb-like DNA-binding domain 16 63 IPR001005 -
Lal9g0804 300 Gene3D - 16 68 - -
Lal9g0804 300 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 11 63 IPR017930 -
Lal9g0804 300 CDD SANT 71 112 IPR001005 -
Lal9g0804 300 CDD SANT 18 63 IPR001005 -
Lal9g0804 300 MobiDBLite consensus disorder prediction 118 137 - -
Lal9g0804 300 Gene3D - 71 117 - -
Lal9g0804 300 ProSiteProfiles Myb-like domain profile. 11 63 IPR001005 -
Lal9g0804 300 MobiDBLite consensus disorder prediction 218 240 - -
Lal9g0804 300 SMART sant 68 116 IPR001005 -
Lal9g0804 300 SMART sant 15 65 IPR001005 -
Lal9g0804 300 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 64 118 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal9g0804 Lal-Chr9 5811348 5814205 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal9g0804 3 294 MYB Transcription Factor Family AT3G61250 49.338 9.64e-91 270
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Lal9g0804 Myb_DNA-binding 4e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal9g0804 K09422 - gmx:100782075 404.06
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal9g0804 9 5811348 5814205 Lal9g0804 9 5811348 5814205 ECH