Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal9g0800 ATGGTTCAACTCAACCACTTTCCCTTCACTCACCTCACATTCCTTCACCTCCTTCTCCATGTATCTAATGCACAAATATCAGCAGAACCACTTCCTACATACATCTCCCGCCATGATTGGGAGCCTTCTTTTGCAATCACAACTGGAGCAGTTATTTGTTCCCTTCTTTTATTAGGATTGATTTCAATCTACATCAGGTACTGCACAGAATCAAGATACAACACCAGAAACAATAACACACTTTTTGGAACTACTAATACATCACAAAGGCTATGTTCTTGTGCACAAGGCATCAACAATGAACTCCTTAGTACCTTTCCAATCCTCTTCTACTCTACTATAAAGGATCTCAAAAAAGGTAAAGATTCATTGGAATGTGCTGTTTGCTTGAATGATTTCAAAGACTATGATACCCTTAGGTTGCTACCAAAATGCAACCATGTTTTTCATCCTTCATGCATAGACTCATGGCTATGTTCCCACGTGACATGCCCCGTTTGTCGCGCCAATTTGAACCAAGATTCATGTGAAGTTGACATAACGGTGGAAACCCATTTGAGTACTCCTCAAAGGGTGCCAGAAAGTCCAGGCTTTATAGCAGAATATGATGGTGGTGATGAGAACAATAGCGAGCAAGTAGAGGAAAACATAAACCAAGTTGTGAGTAACTTAAAGGAAGGTGAGAGTGATTATCTTCGTTCATCAAAGTTGAAGCTTTTGAGGTCAAATTCAACGGGTCATTCAGTTTTGGAATCAGTGAAAACTGTGGAAAGGTACACACTTGTTTTGCCTGAGGATGTGAGGAAGTACATTCTTGTGAACCATAACAACCAAGGAAGAAGGGTTCAGCGTTCAGCTAGCTATAACAACGTTGTTAAGATGCCAATGTTGGAGAGTTCGAGGAAATGTTGGAGTGACAGTGAAGGGTACAACAGCATGAGGGTGTTGTTGACGCCACCACATGTTGCAAGCCGTGGTTAA 981 0.4128 MVQLNHFPFTHLTFLHLLLHVSNAQISAEPLPTYISRHDWEPSFAITTGAVICSLLLLGLISIYIRYCTESRYNTRNNNTLFGTTNTSQRLCSCAQGINNELLSTFPILFYSTIKDLKKGKDSLECAVCLNDFKDYDTLRLLPKCNHVFHPSCIDSWLCSHVTCPVCRANLNQDSCEVDITVETHLSTPQRVPESPGFIAEYDGGDENNSEQVEENINQVVSNLKEGESDYLRSSKLKLLRSNSTGHSVLESVKTVERYTLVLPEDVRKYILVNHNNQGRRVQRSASYNNVVKMPMLESSRKCWSDSEGYNSMRVLLTPPHVASRG 326
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal9g0800 326 Coils Coil 210 230 - -
Lal9g0800 326 CDD RING-H2_EL5_like 125 168 - -
Lal9g0800 326 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 108 175 IPR013083 -
Lal9g0800 326 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 5 189 - -
Lal9g0800 326 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 223 294 - -
Lal9g0800 326 PANTHER RING FINGER DOMAIN-CONTAINING 223 294 - -
Lal9g0800 326 PANTHER RING FINGER DOMAIN-CONTAINING 5 189 - -
Lal9g0800 326 SMART ring_2 126 167 IPR001841 -
Lal9g0800 326 Pfam Ring finger domain 125 168 IPR001841 -
Lal9g0800 326 ProSiteProfiles Zinc finger RING-type profile. 126 168 IPR001841 -
Lal9g0800 326 SUPERFAMILY RING/U-box 120 174 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal9g0800 Lal-Chr9 5771410 5772390 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal9g0800 1 302 Rapid Response to Elicitors AT3G05200 34.615 2.35e-50 170
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal9g0800 K10664 - gmx:100782532 276.559
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal2g0911 2 6085721 6086906 Lal9g0800 9 5771410 5772390 LSH