Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal9g0790 ATGACACCCTCTCGGGTGGCTGGAGGATTAACACAATCATCATTAAGTTCTGGAGTTTTCTTTCAAGGAGATACCCAATCACAGAATATAATCAACTATCACTTAAGCTCGTCTTTTCGTAACAATTCTGACACCATTCATGGAACTGATCGGTCAAATCTTGGTCCAGTTTCTGGGGACATCAATAGTGGAGTTTTGAACGGTGTGGTAAACTCAGCGCGAAGTGTTGGAGCTAGCTCTTTAGTCACTGATGCAAATTCTACACTCTCTGGTGGCCCCAATTTGCAGAGAAGTGCAAGCATTAACACAGACCCGTACTTACGTTTACCTGCCTCACCCATGTCATTTACATCAAATAATACTATTTCGGGGTCATCAGTTATGGATGGTTCTACCGGAGCTCAGCAGAATTCTCATCAAGATCAGAATGTTCAGCAACTGCAGCTTCAGGGTGCCTCAAGTGCTATGTCTTTGTCTGCATCTCAAACTGCTGCATCTACAATACCAATGGGTGCACAAGTACCAGGATCTTCCATCCAAGATCCAAGTAATTTGTCCCAGTTAGCGAAGAAACCTAGGCTGGATATTAAGCAGGACGATATGATGAAACAGCAGGTAATACAACAGATTCTTCAGAGACCAGACCTCATCCAAATGCAGGGTCATAATCCACAGATACATGCTTTGCTTCAGCAGCAGCAGAGAGTGAGGCAACAGCAAATGTTTCAGTCAATGCCACAGTTTCAACGAGTGCAGTTGCAGCAGCAACAACAACAAATGCAATTGAGGCAGCAATTGCAACAACAAGCAATGCAACCCTCATCTTCTGTCAAGCGCCCATTTGATAATGGTGTTAATGGTGTGTGTGCCCGTCGATTGATGCAGTACCTCTATCATCAACGACAACGGCCAAATGATAATAGTATTGCCTATTGGAGAAAATTTGTAACTGAGTATTACTCTCCACGTGCAAAGAAGCGGTGGTGCTTGTCATTATATAATAACGTTGGGCAGCATGCACTCGGTGTGTTTCCCCAAGCTTCTATGGATGCATGGCAGTGCGACATATGTGGCTCCAAATCTGGAAAGGGTTTTGAGGCAACTTTTGAAGTACTCCCTAGACTTAATGAAATCAAATTTGGCAGTGGAGTGATCGATGAACTGTTGTTTTTGGACATGCCGCGTGAATATAGATTTCAGTCTGGTATGATGATGTTAGAATATGCTAAAGCAGTTCAAGAGAGCGTATACGAGCAGCTTCGTGTTAGTCGCGAGGGTCATCTTCGTATCATATTTACTCAAGACCTGAAGATACTATCTTGGGAGTTCTGCGCAAGGCGTCATGAAGAACTTCTTCCTCGTAGGTCGGTTGTACCACAGGTCAACCAGTTGGTTCAAGTAGCTCAAAAATGCCAGAGTACAATTGCTGAAAGTGGGTCAGATGGGGTTTCTCAGCGAGACCTGCAAGGCAACAGCGATATGGTATTGACAGCTGGGCGTCAGCTTGCGAAGAGTTTGGAATTACAATCGCTAAATGAGTTGGGTCTTTCCAAAAGATATGTGAGATTCTTGCAGATGTCTGAGGTTGTCAATAGCATGAAAGATCTGATTGACATATGTAAAGAGCACAAAGTTGGGCCAACTGAGAGCTTGAAAAATTATCCTCAATTTGCAACTGCGGCCAAGCTCCAGATGCAAGAGATGGAACAGCTAGCAAATGTTCAAGGTCTGTCAAGTGATCGAAATACACTTAATAAGCTGATGACGTTGAATCCAGGATTGAACAACCAAGTAAATAATAATCATAATATGGTTAATTGTGGTGCTTTGAGTGGATCAGCACAAGCTGCCTTGGAACTGTCTAACTATCAGAATATTCTCATGAGGCAAAACTCGATGAATTCAAGCCCTGGCCCACTTCAGAGAGAAGGGTCGAGTTTCAATCAATTGAACCAGAGTCCCTCTTCATCTTTGCAAGGCACTGCTACTGCTTTAATTCCAGGGTCAATGCAAAATTCTACCAGTAGGGGTTTCCCAAGTCCCCATCATCTACCACCCCGGCTGCAACACCCGCAGCTTCAACAGCGCTCACTAAGTGCAAATAGCTTGCCCGTGCAAAATTATTCACAGGGATCCCAAGGAAACCAAGCTATACATCATCAGTACATCCAGCAAATGCTACAGGATATGTCAAATAACAACAATGGGGGAGTTCAACCACAGTCTGTTGTTGGTAGACCCAGTGCAAATGGGAATAATATGTCCAATAATGGGTTAGGTTTTGGAGGCCACACTCCATCCATGTCCGGATCTTCTGCCCTTGTTTCCGGAAATAGTGAGCCTGTTTCTAGGAGTAACAGCTTCAAGGCAATTTCGAACAGTGATTCTTCTGCACCAGCTGATGGCAACAATAGGTTCAACCAGAGAATAACTAATATGCCGCAAAATCAACATATGCAGGATATGGTTCAGGATATTGCCCATGAATTCACAGAAAATTCTTTCTTTAACAATGATCTAGATGATAGTATGGGTTTTGGCTGGAAGCCATAA 2553 0.436 MTPSRVAGGLTQSSLSSGVFFQGDTQSQNIINYHLSSSFRNNSDTIHGTDRSNLGPVSGDINSGVLNGVVNSARSVGASSLVTDANSTLSGGPNLQRSASINTDPYLRLPASPMSFTSNNTISGSSVMDGSTGAQQNSHQDQNVQQLQLQGASSAMSLSASQTAASTIPMGAQVPGSSIQDPSNLSQLAKKPRLDIKQDDMMKQQVIQQILQRPDLIQMQGHNPQIHALLQQQQRVRQQQMFQSMPQFQRVQLQQQQQQMQLRQQLQQQAMQPSSSVKRPFDNGVNGVCARRLMQYLYHQRQRPNDNSIAYWRKFVTEYYSPRAKKRWCLSLYNNVGQHALGVFPQASMDAWQCDICGSKSGKGFEATFEVLPRLNEIKFGSGVIDELLFLDMPREYRFQSGMMMLEYAKAVQESVYEQLRVSREGHLRIIFTQDLKILSWEFCARRHEELLPRRSVVPQVNQLVQVAQKCQSTIAESGSDGVSQRDLQGNSDMVLTAGRQLAKSLELQSLNELGLSKRYVRFLQMSEVVNSMKDLIDICKEHKVGPTESLKNYPQFATAAKLQMQEMEQLANVQGLSSDRNTLNKLMTLNPGLNNQVNNNHNMVNCGALSGSAQAALELSNYQNILMRQNSMNSSPGPLQREGSSFNQLNQSPSSSLQGTATALIPGSMQNSTSRGFPSPHHLPPRLQHPQLQQRSLSANSLPVQNYSQGSQGNQAIHHQYIQQMLQDMSNNNNGGVQPQSVVGRPSANGNNMSNNGLGFGGHTPSMSGSSALVSGNSEPVSRSNSFKAISNSDSSAPADGNNRFNQRITNMPQNQHMQDMVQDIAHEFTENSFFNNDLDDSMGFGWKP 850
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal9g0790 850 Pfam LIM-domain binding protein 292 552 IPR029005 -
Lal9g0790 850 PANTHER LIM DOMAIN-BINDING PROTEIN 158 849 IPR029005 -
Lal9g0790 850 PANTHER LIM DOMAIN-BINDING PROTEIN 5 148 IPR029005 -
Lal9g0790 850 MobiDBLite consensus disorder prediction 747 804 - -
Lal9g0790 850 MobiDBLite consensus disorder prediction 118 150 - -
Lal9g0790 850 MobiDBLite consensus disorder prediction 630 697 - -
Lal9g0790 850 MobiDBLite consensus disorder prediction 630 679 - -
Lal9g0790 850 PANTHER LIM-DOMAIN BINDING PROTEIN/SEUSS-RELATED 158 849 - -
Lal9g0790 850 PANTHER LIM-DOMAIN BINDING PROTEIN/SEUSS-RELATED 5 148 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal9g0790 Lal-Chr9 5668291 5677047 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal9g0790 287 556 C2H2 Transcription Factor Family AT1G43850 57.778 1.43e-102 336
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal9g0790 - - gmx:100816886 1163.67