Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal9g0784 ATGGACGTAGATGGGGGCAACAAGCGCGTGTTCAACAGACTCGGAGGTGATCCAAGAAACCAGAAAGTGTGCTATCATTGGCAAGCTGGAAAGTGCAATCGCCATCCTTGCATGTTTCTTCATAGTGAGGTGCCTCTTCATAATTCCAATGGCGCTCCTTCTAAAAGGTCTTATGGGTCTGCGGAAAATTTAAGCTTTAACGGTCCTCCGCGCCGGACATCGAATTTCAACACATGGGGGCGTGGGGGCGGAGGAAGAGGTGGAAGTGGCGGTAGAGGTGGTGGCCGTGGCGGAGAAGTAGTTAAGAAAGCTGAGAAAATTTGTAATTATTGGGTTCAGGGGAGTTGTAGTTTCGGAGAGAGGTGTAAGTTCCTTCATTCTTGGAGTTTAGGAGATGGGTTTTCTTTGTTGACCCAGCTTGATGGCCATAAGAAGGTTGTGAGTGGAATAGCCTTTCCCTCTGGTTCGAATAAGCTTTATACAGGAAGCACTGATGAGACTGTTAGGGTTTGGGACTGCCAGTCTGGACAGTGTACGGCTGTGATCAATCTTGGAGGCGAAGTAGGTTGCATGATCAGTGAAGGTCCTTGGGTTTTTGTTGGCATACCCAATTCTGTCAAGGCCTGGAACACACAAAATTTGATGGAGCTAAGTCTGAGCGGTCCTGTTGGACAAGTTTATGCTCTTGTTGTGATTAATGATATGCTTTTTGCTGGTACACAGGATGGATCTATATTAATTTGGAAGTTTAATTTAACTGCCAACTGTTTTGAGCCAGCTGCATCACTCAAAGGTCATTCCCATGGTGTTGTTTCATTAGTTGTTGGAGCTAATAGACTCTACTCTGGTTCAATGGACAACACAATAAGAGTCTGGAGCCTTGAAACTCTGCAGTGTTTACAGACACTGACAGAGCACACTTCTGTGGTGATGTCTATACTCTGCTGGGACCAGTTCCTCTTATCTTGCTCACTGGACAAGACAGTCAAGGTGTGGTTTGCCACAGAAAGTGGAAATCTGGAAGTCACATACACTCACCAGGAGGAACATGGTATACTTACTCTCTGTGGGATGCATGATTCACAAGGCAAGCCCATTTTGGTGTGTTCCTGCAATGATAATACTGTGCACCTCTATGATCTGCCATCATTTGCAGAGAGAGGCAAGATATTCACAAAACAGGAAGTAAGAGCAATTCAGATAGGGCCTGGTGGCATATTCTTCACTGGTGATGGAACTGGTCAAGTTAAAGTGTGGAATTGGATAGCTGAACCAACTACTTCAATCCAATGA 1293 0.4548 MDVDGGNKRVFNRLGGDPRNQKVCYHWQAGKCNRHPCMFLHSEVPLHNSNGAPSKRSYGSAENLSFNGPPRRTSNFNTWGRGGGGRGGSGGRGGGRGGEVVKKAEKICNYWVQGSCSFGERCKFLHSWSLGDGFSLLTQLDGHKKVVSGIAFPSGSNKLYTGSTDETVRVWDCQSGQCTAVINLGGEVGCMISEGPWVFVGIPNSVKAWNTQNLMELSLSGPVGQVYALVVINDMLFAGTQDGSILIWKFNLTANCFEPAASLKGHSHGVVSLVVGANRLYSGSMDNTIRVWSLETLQCLQTLTEHTSVVMSILCWDQFLLSCSLDKTVKVWFATESGNLEVTYTHQEEHGILTLCGMHDSQGKPILVCSCNDNTVHLYDLPSFAERGKIFTKQEVRAIQIGPGGIFFTGDGTGQVKVWNWIAEPTTSIQ 430
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal9g0784 430 Gene3D - 99 127 - -
Lal9g0784 430 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 140 172 - -
Lal9g0784 430 ProSiteProfiles Trp-Asp (WD) repeats profile. 140 181 IPR001680 GO:0005515
Lal9g0784 430 Gene3D - 257 428 IPR015943 GO:0005515
Lal9g0784 430 SUPERFAMILY WD40 repeat-like 127 421 IPR036322 GO:0005515
Lal9g0784 430 Gene3D - 128 256 IPR015943 GO:0005515
Lal9g0784 430 PRINTS G protein beta WD-40 repeat signature 159 173 IPR020472 -
Lal9g0784 430 PRINTS G protein beta WD-40 repeat signature 280 294 IPR020472 -
Lal9g0784 430 PRINTS G protein beta WD-40 repeat signature 320 334 IPR020472 -
Lal9g0784 430 SUPERFAMILY CCCH zinc finger 102 127 IPR036855 GO:0046872
Lal9g0784 430 MobiDBLite consensus disorder prediction 51 80 - -
Lal9g0784 430 SMART c3hfinal6 19 43 IPR000571 GO:0046872
Lal9g0784 430 SMART c3hfinal6 104 128 IPR000571 GO:0046872
Lal9g0784 430 Pfam WD domain, G-beta repeat 259 293 IPR001680 GO:0005515
Lal9g0784 430 Pfam WD domain, G-beta repeat 136 172 IPR001680 GO:0005515
Lal9g0784 430 Pfam WD domain, G-beta repeat 298 332 IPR001680 GO:0005515
Lal9g0784 430 ProSiteProfiles Zinc finger C3H1-type profile. 18 44 IPR000571 GO:0046872
Lal9g0784 430 PANTHER TRANSCRIPTION FACTOR C3H FAMILY-RELATED 1 427 - -
Lal9g0784 430 MobiDBLite consensus disorder prediction 51 97 - -
Lal9g0784 430 PANTHER - 1 427 IPR044715 -
Lal9g0784 430 Pfam Zinc finger domain 108 126 - -
Lal9g0784 430 ProSiteProfiles Trp-Asp (WD) repeats profile. 263 302 IPR001680 GO:0005515
Lal9g0784 430 SMART WD40_4 256 293 IPR001680 GO:0005515
Lal9g0784 430 SMART WD40_4 337 380 IPR001680 GO:0005515
Lal9g0784 430 SMART WD40_4 296 333 IPR001680 GO:0005515
Lal9g0784 430 SMART WD40_4 383 420 IPR001680 GO:0005515
Lal9g0784 430 SMART WD40_4 133 172 IPR001680 GO:0005515
Lal9g0784 430 SMART WD40_4 212 249 IPR001680 GO:0005515
Lal9g0784 430 ProSiteProfiles Zinc finger C3H1-type profile. 102 129 IPR000571 GO:0046872
Lal9g0784 430 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 263 296 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal9g0784 Lal-Chr9 5588139 5594105 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal9g0784 235 420 Miscellaneous Gene Families AT5G08390 27.273 8.35e-08 52.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Lal9g0784 WD40 4.6e-05 CL0186
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal9g0784 - - gmx:100775542 716.457
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal9g0784 9 5588139 5594105 Lal9g0784 9 5588139 5594105 ECH
Lal2g0890 2 5850939 5855955 Lal9g0784 9 5588139 5594105 LSH
Lal1g0802 1 5464984 5470494 Lal9g0784 9 5588139 5594105 LSH