Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal9g0777 ATGGGAAGAGGGAGAGTGATTCTGGAAAGAATAGAGAACAAGATTAGTCGCCAAGTAACCTTCTCAAAGCGCAGAAGTGGTTTGATGAAGAAAGCATTCGAGCTTTCTCTGTTATGTGACGCTGAGGTAGCACTTATCATCTTCTCTGGCCGTGGCAAGCTTCACCAGTACAGCAGCACCGACATCAATAAAATCATAGAGAAGTATCGTCAATGTTGTTACAATAAGTTGCAAGCTAGCGGAGATTTATTGGAACATGAACCACAGAGCCAATACCATGAGTTCTTGAGATTAAAAGTGAAACATGAATGTCTTGAACGATCACAAAGGAATTTTCAAGGAGAAGAACTTGAGCCACTTAGCTTGGAAGAATTAGATAGCCTTGAGAAACAACTTGACAGAACCACCACACTAGCTCGACAACAGCACATGAAGAACCTCGTTGCAAGAGCGAATGAATTACGCGAAAAGGTGCATAGCTTGGAGGAGCTCAACAAACAATTAGAATCCAAGGTTTTCCATTTAAGTAATCATGTTATTATGGGAAAAGATGAATTATCGAACCTTGTCCCTAACTGTACCAACCAAATTCAGCTGCATGCTGGACAAGCTACTCAGTTTGAATATGGGACAACCTTAAATACATGGTATTGA 654 0.4083 MGRGRVILERIENKISRQVTFSKRRSGLMKKAFELSLLCDAEVALIIFSGRGKLHQYSSTDINKIIEKYRQCCYNKLQASGDLLEHEPQSQYHEFLRLKVKHECLERSQRNFQGEELEPLSLEELDSLEKQLDRTTTLARQQHMKNLVARANELREKVHSLEELNKQLESKVFHLSNHVIMGKDELSNLVPNCTNQIQLHAGQATQFEYGTTLNTWY 217
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal9g0777 217 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Lal9g0777 217 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Lal9g0777 217 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Lal9g0777 217 PANTHER MADS BOX PROTEIN 1 184 - -
Lal9g0777 217 SUPERFAMILY SRF-like 2 78 IPR036879 GO:0003677|GO:0046983
Lal9g0777 217 CDD MADS_MEF2_like 2 78 IPR033896 GO:0000977|GO:0045944
Lal9g0777 217 ProSiteProfiles K-box domain profile. 88 178 IPR002487 GO:0003700|GO:0005634|GO:0006355
Lal9g0777 217 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Lal9g0777 217 PANTHER MADS-BOX TRANSCRIPTION FACTOR 1 184 - -
Lal9g0777 217 Pfam K-box region 86 172 IPR002487 GO:0003700|GO:0005634|GO:0006355
Lal9g0777 217 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Lal9g0777 217 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Lal9g0777 217 Coils Coil 144 171 - -
Lal9g0777 217 Gene3D - 13 96 IPR036879 GO:0003677|GO:0046983
Lal9g0777 217 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal9g0777 Lal-Chr9 5511699 5517241 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal9g0777 1 180 MADS-box Gene Family AT2G45650 49.444 1.54e-49 160
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Lal9g0777 K-box 2.6e-15 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal9g0777 K09264 - gmx:100793681 259.996