Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal9g0755 ATGCCAGTCATGAAAAAGAACTCCGAGCAGACTCGTATCGGATCTGCATTTGACAAGTTGGCAAAGCAACTTGGGAAACCTGTTGAGTTTGAATTGCCAGAGTGGTTTACTAAGTCGAAGCCAATGCAATATACCTTTATAAAGCGTAATATATATCTCACGAAGAAGTTCAAGAGACGGTTTGAAGATGATGGAATATTCTGTTCCTGTACTCCTTCACCTGAATCTCCTAGTGTATGTGGTAAAGATTGCCAATGTGGGATGCTTCTGTCTAGCTGTTCTTCAGGCTGTAATTGTGGGAGCTCCTGTCTGAACAAAGCATTTCAGCATCGCCCTGTGAAAAAGATGAAATTGGTTCGGACTGAGAAATGTGGTTCTGGAATTGTGGCTGATGAAGATATCAAGCTTGGGGACTTCATTATAGAATATGTTGGAGAAGTTATCGATGACAAAACATGTGAAGAAAGGCTTTGGAAGATGAAACATCGTGGGGAAACAAACTTTTACTTGTGCGAAATCAATCGAGATATGGTGATTGATGCAACATATAAAGGAAACAAATCAAGATATATCAATCATAGTTGCTGCCCCAATACTGAGATGCAGAAATGGATAATTGATGGTGAAACAAGAATTGGCATATTTGCAACTTGTGACATACAAAAGGGCGAGCATTTGACTTACGATTACCAGTTTGTTCAGTTTGGTGCAGATCAAGATTGCCACTGTGGAGCTGTTGGATGTAGACGTAAGCTGGGCGTCAAACCTGGAAAGCCTAAAATGTCTTCAGATGCTGCATTAAAATTAGTTGCATATCAGGAAGAATGGAACTGGCAATGCTCAAGCTCTTGGCTCCTTGGTGAAATAGAGGTTTTGATTCCTTTGCATAGGTCAACTCCTAAAGCTTGTGTCAGGGTTTATCGAAACAGAGGTTTGCAAATTGGAAGTTCTCAAGTTGTTGACCAATCAAAGTGCTTAAGCAATTGCATTGGTGAAGTTATTAGGATAAAAGACCTTGAAAATGTGAGGTTTGGCATTATTAAGCGGTTTGATAAATATTCCCGAAAACACTCGATCTTGTTTGAGAATGGCTGTGTTGAAATTTATGACATGTCAAAAGAAGAGTGGGAACTAGTTGGATTGTGA 1146 0.3979 MPVMKKNSEQTRIGSAFDKLAKQLGKPVEFELPEWFTKSKPMQYTFIKRNIYLTKKFKRRFEDDGIFCSCTPSPESPSVCGKDCQCGMLLSSCSSGCNCGSSCLNKAFQHRPVKKMKLVRTEKCGSGIVADEDIKLGDFIIEYVGEVIDDKTCEERLWKMKHRGETNFYLCEINRDMVIDATYKGNKSRYINHSCCPNTEMQKWIIDGETRIGIFATCDIQKGEHLTYDYQFVQFGADQDCHCGAVGCRRKLGVKPGKPKMSSDAALKLVAYQEEWNWQCSSSWLLGEIEVLIPLHRSTPKACVRVYRNRGLQIGSSQVVDQSKCLSNCIGEVIRIKDLENVRFGIIKRFDKYSRKHSILFENGCVEIYDMSKEEWELVGL 381
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal9g0755 381 ProSiteProfiles Post-SET domain profile. 237 253 IPR003616 -
Lal9g0755 381 ProSiteProfiles SET domain profile. 114 231 IPR001214 GO:0005515
Lal9g0755 381 PANTHER SET DOMAIN PROTEINS 12 378 - -
Lal9g0755 381 SMART set_7 114 237 IPR001214 GO:0005515
Lal9g0755 381 Gene3D SET domain 30 269 IPR046341 -
Lal9g0755 381 Pfam SET domain 125 230 IPR001214 GO:0005515
Lal9g0755 381 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE 12 378 - -
Lal9g0755 381 ProSiteProfiles Histone-lysine N-methyltransferase (EC 2.1.1.43) family profile. 38 297 IPR025787 -
Lal9g0755 381 SUPERFAMILY SET domain 26 243 IPR046341 -
Lal9g0755 381 SMART shorttest3 63 113 IPR006560 GO:0005634|GO:0018024
Lal9g0755 381 ProSiteProfiles AWS domain profile. 63 112 IPR006560 GO:0005634|GO:0018024
Lal9g0755 381 SMART PostSET_3 237 253 IPR003616 -
Lal9g0755 381 CDD SET_ASHR3-like 115 253 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal9g0755 Lal-Chr9 5271625 5281139 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal9g0755 87 249 C2H2 Transcription Factor Family AT2G23740 33.880 9.53e-23 98.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Lal9g0755 SET 9.9e-18 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal9g0755 - - gmx:100808183 613.224
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal1g0776 1 5269752 5277912 Lal9g0755 9 5271625 5281139 LSH