Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lal9g0707 | ATGGAGCTTGATTTGAATCGAGAGCCATTGGACATGATTAGTACTACTTCAGAGATTGAACTGGATTCTATATTGGATGAACTAGAATCTGACAATGGACCTATATATGATCGTATTCGACACCTTGAAGCAGTAACTTCCCGAGCTAGGGAGCGTCACAGGTGGCCCCCGGTTCACAATCCGATTCAAATTACCAACTTTACAGCAGATGTCACAACAGCAGCTGATGATGTTCACGACGAAGAAAGGAGGGAAGAGAACCAGGAAGTTGAAGAAGGAATTGTTGAAAGTGCGAAAGGGCATGAAGGTAAGGGTGCCTATTTAGTAGCTAAAGCGTTGGGTGTGGAAAGAGATGTGGCAGATGGCAGAACTGGGAACTATTTTGATTGTAATATATGCTTGGACACGGCGAGAGATCCTGTTGTGACTTGCTGTGGTCACTTGTTTTGTTGGCCGTGCTTCTATCAGTTGTCGTATGCTTATCCAAATGCAAAGGAATGCCCTGTTTGTAAAGGAGAGGTCACTGATAATGGCATTATTCCAATTTATGGCAATGCTAGTGATGGGTGCCATTCTCATTTGGAGTTTACTGAAAATGGTTTGAGAGTTCCTCCTCGACCCCGTGCACCTAGAGTTGAGAGTGTTAGGCAACGAATTATAAACCAAGGAGCATCTCCTTCTATAATCCGAAATGTTCAGCGTTTTGGTGGATTAGGAGAGCGAGTTATGTCAGGTCTCAATAATCCAGCTGGAAGAAATAATGTTTTGCCAGCTCATCCTCGCCTGCAGACATTCAATACTCAACACACTCATTCTCATGCAATTTCAAGGTTGTTGATGCAAGGAGCGTCCCTTGAATATGCATTAAACTCTGCATTGAATACCGCTGACAGAATAGTCGACGACCTTGAATCATATATTCATGGTCACCACACAGGAAGGAGCACACAGTTAGGTCCTGGTGCTCTTAATAGAGGTTCAACTTTTAGTGTTGCTGCTACAAGCCTTCCAGGGATTCGTGCTCAAATTGTTACTGCAGCCAATGCCGCAGCTGCAGCTTCTCTTTTAAATAGGAATAATGACACAACTGCTGTTATGGGCGCGGGAATTCAGGCAATCAATGGTAGCTTACAGATTAGGTCGTCTGACCCTTCTTCATCGTACAGTAGAAGAAGAACTGATTCTTCAAGACAAGATTCAAATGAGCGCAGAAGAAGAAGTGTACATGCCATGCGTGGGAATGCTTTCACCCCTTCAATCTGCCCTTTTCTTGTAGCGGTTTCGGCTTAA | 1290 | 0.4403 | MELDLNREPLDMISTTSEIELDSILDELESDNGPIYDRIRHLEAVTSRARERHRWPPVHNPIQITNFTADVTTAADDVHDEERREENQEVEEGIVESAKGHEGKGAYLVAKALGVERDVADGRTGNYFDCNICLDTARDPVVTCCGHLFCWPCFYQLSYAYPNAKECPVCKGEVTDNGIIPIYGNASDGCHSHLEFTENGLRVPPRPRAPRVESVRQRIINQGASPSIIRNVQRFGGLGERVMSGLNNPAGRNNVLPAHPRLQTFNTQHTHSHAISRLLMQGASLEYALNSALNTADRIVDDLESYIHGHHTGRSTQLGPGALNRGSTFSVAATSLPGIRAQIVTAANAAAAASLLNRNNDTTAVMGAGIQAINGSLQIRSSDPSSSYSRRRTDSSRQDSNERRRRSVHAMRGNAFTPSICPFLVAVSA | 429 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lal9g0707 | 429 | MobiDBLite | consensus disorder prediction | 380 | 411 | - | - | |
Lal9g0707 | 429 | CDD | RING-HC_AtRMA_like | 128 | 172 | - | - | |
Lal9g0707 | 429 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 106 | 198 | IPR013083 | - | |
Lal9g0707 | 429 | Pfam | Zinc finger, C3HC4 type (RING finger) | 129 | 175 | - | - | |
Lal9g0707 | 429 | SUPERFAMILY | RING/U-box | 129 | 176 | - | - | |
Lal9g0707 | 429 | SMART | ring_2 | 130 | 170 | IPR001841 | - | |
Lal9g0707 | 429 | PANTHER | E3 UBIQUITIN-PROTEIN LIGASE RNF5-RELATED | 6 | 387 | IPR045103 | GO:0005783|GO:0006511|GO:0061630 | |
Lal9g0707 | 429 | MobiDBLite | consensus disorder prediction | 390 | 409 | - | - | |
Lal9g0707 | 429 | PANTHER | ZINC FINGER, C3HC4 TYPE (RING FINGER) PROTEIN | 6 | 387 | - | - | |
Lal9g0707 | 429 | ProSiteProfiles | Zinc finger RING-type profile. | 130 | 171 | IPR001841 | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Lal9g0707 | Lal-Chr9 | 4886378 | 4889242 | Dispersed/Transposed |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Lal9g0707 | 94 | 219 | C3H Transcription Factor Family | AT3G58030 | 47.656 | 8.60e-32 | 124 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Lal9g0707 | K10666 | - | gmx:100793230 | 323.168 |