Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal9g0707 ATGGAGCTTGATTTGAATCGAGAGCCATTGGACATGATTAGTACTACTTCAGAGATTGAACTGGATTCTATATTGGATGAACTAGAATCTGACAATGGACCTATATATGATCGTATTCGACACCTTGAAGCAGTAACTTCCCGAGCTAGGGAGCGTCACAGGTGGCCCCCGGTTCACAATCCGATTCAAATTACCAACTTTACAGCAGATGTCACAACAGCAGCTGATGATGTTCACGACGAAGAAAGGAGGGAAGAGAACCAGGAAGTTGAAGAAGGAATTGTTGAAAGTGCGAAAGGGCATGAAGGTAAGGGTGCCTATTTAGTAGCTAAAGCGTTGGGTGTGGAAAGAGATGTGGCAGATGGCAGAACTGGGAACTATTTTGATTGTAATATATGCTTGGACACGGCGAGAGATCCTGTTGTGACTTGCTGTGGTCACTTGTTTTGTTGGCCGTGCTTCTATCAGTTGTCGTATGCTTATCCAAATGCAAAGGAATGCCCTGTTTGTAAAGGAGAGGTCACTGATAATGGCATTATTCCAATTTATGGCAATGCTAGTGATGGGTGCCATTCTCATTTGGAGTTTACTGAAAATGGTTTGAGAGTTCCTCCTCGACCCCGTGCACCTAGAGTTGAGAGTGTTAGGCAACGAATTATAAACCAAGGAGCATCTCCTTCTATAATCCGAAATGTTCAGCGTTTTGGTGGATTAGGAGAGCGAGTTATGTCAGGTCTCAATAATCCAGCTGGAAGAAATAATGTTTTGCCAGCTCATCCTCGCCTGCAGACATTCAATACTCAACACACTCATTCTCATGCAATTTCAAGGTTGTTGATGCAAGGAGCGTCCCTTGAATATGCATTAAACTCTGCATTGAATACCGCTGACAGAATAGTCGACGACCTTGAATCATATATTCATGGTCACCACACAGGAAGGAGCACACAGTTAGGTCCTGGTGCTCTTAATAGAGGTTCAACTTTTAGTGTTGCTGCTACAAGCCTTCCAGGGATTCGTGCTCAAATTGTTACTGCAGCCAATGCCGCAGCTGCAGCTTCTCTTTTAAATAGGAATAATGACACAACTGCTGTTATGGGCGCGGGAATTCAGGCAATCAATGGTAGCTTACAGATTAGGTCGTCTGACCCTTCTTCATCGTACAGTAGAAGAAGAACTGATTCTTCAAGACAAGATTCAAATGAGCGCAGAAGAAGAAGTGTACATGCCATGCGTGGGAATGCTTTCACCCCTTCAATCTGCCCTTTTCTTGTAGCGGTTTCGGCTTAA 1290 0.4403 MELDLNREPLDMISTTSEIELDSILDELESDNGPIYDRIRHLEAVTSRARERHRWPPVHNPIQITNFTADVTTAADDVHDEERREENQEVEEGIVESAKGHEGKGAYLVAKALGVERDVADGRTGNYFDCNICLDTARDPVVTCCGHLFCWPCFYQLSYAYPNAKECPVCKGEVTDNGIIPIYGNASDGCHSHLEFTENGLRVPPRPRAPRVESVRQRIINQGASPSIIRNVQRFGGLGERVMSGLNNPAGRNNVLPAHPRLQTFNTQHTHSHAISRLLMQGASLEYALNSALNTADRIVDDLESYIHGHHTGRSTQLGPGALNRGSTFSVAATSLPGIRAQIVTAANAAAAASLLNRNNDTTAVMGAGIQAINGSLQIRSSDPSSSYSRRRTDSSRQDSNERRRRSVHAMRGNAFTPSICPFLVAVSA 429
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal9g0707 429 MobiDBLite consensus disorder prediction 380 411 - -
Lal9g0707 429 CDD RING-HC_AtRMA_like 128 172 - -
Lal9g0707 429 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 106 198 IPR013083 -
Lal9g0707 429 Pfam Zinc finger, C3HC4 type (RING finger) 129 175 - -
Lal9g0707 429 SUPERFAMILY RING/U-box 129 176 - -
Lal9g0707 429 SMART ring_2 130 170 IPR001841 -
Lal9g0707 429 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF5-RELATED 6 387 IPR045103 GO:0005783|GO:0006511|GO:0061630
Lal9g0707 429 MobiDBLite consensus disorder prediction 390 409 - -
Lal9g0707 429 PANTHER ZINC FINGER, C3HC4 TYPE (RING FINGER) PROTEIN 6 387 - -
Lal9g0707 429 ProSiteProfiles Zinc finger RING-type profile. 130 171 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal9g0707 Lal-Chr9 4886378 4889242 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal9g0707 94 219 C3H Transcription Factor Family AT3G58030 47.656 8.60e-32 124
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal9g0707 K10666 - gmx:100793230 323.168
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal9g0707 9 4886378 4889242 Lal9g0707 9 4886378 4889242 ECH