Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal9g0706 ATGGAACTTGATTTGAGCTTAGGAGACTCTTCAAGGTCTTGTGGGTTCATGGAAAAGTCACATAAAGCTTCTAACCAATTGGGATTTGGCTTCAACACCACTACTACCTTATCAATTGGTCAAGTTATTACAACTAAACAAAGTGATGAACACCAACAAGAAGAAACAACAAAGGAAAAGCATAAAGATAATAGTCACTTAGAAGATCAAGAAGGTGTAAATGAATACCATAATAGTACTACTTCTCATAAAGCTAAGAATAACACATCAATTTTGAAGCTTGATTTTCTTCCTCCTATTAACGCACTTCCCCTTCAGCCTTTCCCATGGAATCCACCACCTTTTGAAAACGCTGTTGGGAGTTGTCCAAGGGGTTTGGACATGAACAGGCTGCCGCTAGCGGTGGCGGTAGCGGTGGAGGAAGTGACGGAGTTGTCTTCATCATTCCCCAACAGTAGAGGAGGGAGTGTGAATAGTGATCAAAGGGATGATAGTTCTTCAAGAGCAAGTGATGAAGATGAGAGTGGTGGAAGCATTACAAAGAAGCTGAGGCTATCTAAGGAACAATCTAATTTCCTTGAACATAGCTTCAATGACCATAACACTCTTAACCCAAAGCAAAAGCTTGGTCTTGCAAAACATCTCCATCTTCGCCCTCGCCAAGTAGAAGTGTGGTTTCAAAACAGAAGAGCAAGGACGAAATTGAAGCAGACAGAAGTGGATTGTGAGTACTTGAAGAAGTGTTGTGAGACACTGAAGGAAGAGAATAGAAGGCTTCATAAGGAGCTTCAAGAATTGAGAACCTTGAAAACTTCCAACACATTTTCCATGCATTTACCAGCCACTACCTTAACAATGTGCCCATCTTGTGAACATGTTTCCACCAATTCTAATTCCACTACCAATAATGAACCAACAACCTCAAAATTCCAACATGCCAAAAGGTTTTAA 951 0.4059 MELDLSLGDSSRSCGFMEKSHKASNQLGFGFNTTTTLSIGQVITTKQSDEHQQEETTKEKHKDNSHLEDQEGVNEYHNSTTSHKAKNNTSILKLDFLPPINALPLQPFPWNPPPFENAVGSCPRGLDMNRLPLAVAVAVEEVTELSSSFPNSRGGSVNSDQRDDSSSRASDEDESGGSITKKLRLSKEQSNFLEHSFNDHNTLNPKQKLGLAKHLHLRPRQVEVWFQNRRARTKLKQTEVDCEYLKKCCETLKEENRRLHKELQELRTLKTSNTFSMHLPATTLTMCPSCEHVSTNSNSTTNNEPTTSKFQHAKRF 316
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal9g0706 316 ProSitePatterns 'Homeobox' domain signature. 211 234 IPR017970 GO:0000981|GO:0006355
Lal9g0706 316 Pfam Homeodomain 182 234 IPR001356 GO:0003677
Lal9g0706 316 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN HAT14 1 312 - -
Lal9g0706 316 MobiDBLite consensus disorder prediction 144 185 - -
Lal9g0706 316 MobiDBLite consensus disorder prediction 144 163 - -
Lal9g0706 316 ProSiteProfiles 'Homeobox' domain profile. 176 236 IPR001356 GO:0003677
Lal9g0706 316 SMART halz 236 279 IPR003106 GO:0006355|GO:0043565
Lal9g0706 316 Coils Coil 249 272 - -
Lal9g0706 316 MobiDBLite consensus disorder prediction 164 181 - -
Lal9g0706 316 MobiDBLite consensus disorder prediction 45 68 - -
Lal9g0706 316 SUPERFAMILY Homeodomain-like 179 245 IPR009057 -
Lal9g0706 316 Gene3D - 184 234 - -
Lal9g0706 316 Pfam Homeobox associated leucine zipper 236 269 IPR003106 GO:0006355|GO:0043565
Lal9g0706 316 MobiDBLite consensus disorder prediction 294 316 - -
Lal9g0706 316 PANTHER - 1 312 - -
Lal9g0706 316 SMART HOX_1 178 240 IPR001356 GO:0003677
Lal9g0706 316 MobiDBLite consensus disorder prediction 294 309 - -
Lal9g0706 316 MobiDBLite consensus disorder prediction 48 68 - -
Lal9g0706 316 CDD homeodomain 181 237 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal9g0706 Lal-Chr9 4876351 4879438 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal9g0706 124 295 Homeobox Transcription Factor Family AT4G16780 58.523 2.76e-61 195
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Lal9g0706 Homeodomain 1.1e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal9g0706 K09338 - gmx:100778742 300.827
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal9g0706 9 4876351 4879438 Lal9g0706 9 4876351 4879438 ECH