Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal9g0688 ATGTCTAGAATATGTGTCAAAAATCTCCCTAAATATGCTCTCGAAGATCGTCTTCGAGATTTCTTTTCTCAAAAAGGAGGAGAAATTACAGACATTAAACTTATGCGTACCAAAGAGGGTAAGAGTCGTCAATTTGCTTTTATTGGATTTCGTACTGAACATGAAGCTCAACAAGCTATTCTTTATTTCAATAGATCTTACTTTGACACTTCTAGAATTACCTGTGAGGTGGCTCGAAAATTCGGCGATGCAGAACTTCCACGTCCGTGGAGTCGACATTCCTCTAAGAAAGAGAATAAAGTAGTTACTGCAGAACCAGATGCTACGAAAAAGACGAAAATTGCGGCTGGAGGTAAAGGACAAGGAGATAATTCTAAGGACAATGTTGGTATTGAGAATGACCCGGAGCTTCAAGAATTTCTTCAGGTTATGCAGCCTCGAGTTAAGTCTAAAATGTGGGCGAATGATACTTCAATTATATCCGAGGTTGCTGAGAAGAGGCAGGTGATAGCGGGTAAAGGTAGTAAGGATAATACATTGGTTTCAATCCAAGGGGAAGATATAGTTGAAAGTGACTCACTAGTCGATGATGATGATGATGATGGTATTGAAAATATTCGTGAACCCGACAAGATACCTGAGTTTGAGCATGATGGACTCTTGTCTGATACGGATTATTTCAAGAGTAGAGTGACAACAGAGTGGTCTGATTCTGATAGTGACGATGATGAAGACAATGTCGATGATGCTGAAGACAGCAATGATCATGATAATGAAAATGAAGAAAATGGTGATAAAAAATCTTTAGAGAAAACCGGAAGAAATGGTATTAAAAAGTTAGATCTAGAAGAGGGCCAAGAAGATGATATTCAGAAGGATGTTTCTCACGAAAAGGCTCCGATAGATGCATCTGAGCAAGGAGGCCAATCATCAAATTCACAGGATGAGAAAAGAGTCGTTGAGTCCTGCCGACTGTTTGTCCGTAATCTGCCATACACCACCACTGAAGAGGAACTGGAGGAGCATTTCAGCAAGTTTGGCAGTGTCTCACAGGTTCACGTAGTCGTTGATAAAGATACAAAACGATCCAAAGGAATAGCTTATATTCTGTACTCAGATCCTGAATCTGCAGCCAGGGCACTAGAAGAGTTAGACAATTCAATCTTTCAAGGAAGATTGTTGCATGTTATGCCAGCCATACAAAGACCTTCTGACAACAAAGAGAACAATGTTTCGAAGGACCAACAGTCTAAAACTCTCAAACAACGGAGAGTAGAAGAAAGGAAAGCGGCTGAAGCTAGCGGAGATACAAGAGCATGGAATAGTCTGTTCATGCGCCCTGATACAGTTGTGGAAAACATTGCTCTGAAATATGGTGTCAGTAAAAGTGATTTACTTGACCGTGAAGCTGATGATCTTGCCGTACGTATTGCTCTGGGAGAAACTCAAGTGATTTCAGAAACAAAAAATGCTTTTAAAAATGCTGGAGTGAATGTGGAAGCTTTGGAGCAACTTACCAATGGTAAAGTTGATGGCGTAAAAAGAAGTAACCATGTGGTTTTAGTGAAGAACCTTCCCTATGGTTCTACAGAAAGTGAACTTGCGAAGATGTTTGGGAAATTCGGTAGTTTGGATAAAATAATTCTCCCTCCGACAAAGACTTTAGCCCTGGTTGTTTTCCTTGAGCCAGCTGAAGCGCGAGCAGCTTTTAGAGGATTATCTTACAAGCGTTACAAGGATGCTCCATTATATTTGGAATGGGCTCCTTCCGATGTTCTTATCCAAAATTCAACATCTAAAAATAACGAAATGGATGGTGCAATTGGTGAAAATGATTTCAAGCGACAGATATTGGAGCAACATGTAGAAAGAATATCAGATGTGGACATTGATCCGGACAGAGTGGAGGCTCGGTCCCTGTTTGTCAAGAACCTCAATTTCAAAACGACAGATGAGGGTTTGAAGAGCCATTTTAGTGAACACGTGAAAGAGGGAAAAGTTCTGAGTGTCAAGGTGAAGAAGCATTTGAAAAATGGGAAAAATGTTTCTATGGGGTTTGGATTTGCTGAATTTGACTCCATGGAGACTGCCACAAATGTTTGCAGAGTTTTACAGGGGACTGTTTTGGATGGACATGCTCTTATTTTACAACTATGTCAAGTCAAGAAGGATGGGGATGTACGAAAGACAGTTGAGAAGGATAAGAGCTCAACAAAGTTGCTTGTAAGAAATGTTGCGTTTGAGGCAACAGAGAAGGATCTGAGACAGTTGTTTACTCCATTTGGCCAGATTAAAAGCTTAAGGTTGCCGATGAAGTTTGGGAATCATAGAGGTTTTGCTTTTGTGGAGTATGTTACTCAGCAAGAGGCACAAAATGCACTTAAAGCACTTTCAAGTACCCATTTGTATGGCAGGCATCTGGTGATCGAGAGAGCGAAAGAGGGTGAGAGTTTGGAAGAACTGCGAGCGAGAACAGCTGCTCAATTTAGTGATGAACAAAATGGATTTCAAAATGCTACAAAGAAAAGGAAGCAGGTAGCTATCTTAGATGAAAGAAAGATGAAGTTTGAAAGATTTACTGATTAG 2586 0.4037 MSRICVKNLPKYALEDRLRDFFSQKGGEITDIKLMRTKEGKSRQFAFIGFRTEHEAQQAILYFNRSYFDTSRITCEVARKFGDAELPRPWSRHSSKKENKVVTAEPDATKKTKIAAGGKGQGDNSKDNVGIENDPELQEFLQVMQPRVKSKMWANDTSIISEVAEKRQVIAGKGSKDNTLVSIQGEDIVESDSLVDDDDDDGIENIREPDKIPEFEHDGLLSDTDYFKSRVTTEWSDSDSDDDEDNVDDAEDSNDHDNENEENGDKKSLEKTGRNGIKKLDLEEGQEDDIQKDVSHEKAPIDASEQGGQSSNSQDEKRVVESCRLFVRNLPYTTTEEELEEHFSKFGSVSQVHVVVDKDTKRSKGIAYILYSDPESAARALEELDNSIFQGRLLHVMPAIQRPSDNKENNVSKDQQSKTLKQRRVEERKAAEASGDTRAWNSLFMRPDTVVENIALKYGVSKSDLLDREADDLAVRIALGETQVISETKNAFKNAGVNVEALEQLTNGKVDGVKRSNHVVLVKNLPYGSTESELAKMFGKFGSLDKIILPPTKTLALVVFLEPAEARAAFRGLSYKRYKDAPLYLEWAPSDVLIQNSTSKNNEMDGAIGENDFKRQILEQHVERISDVDIDPDRVEARSLFVKNLNFKTTDEGLKSHFSEHVKEGKVLSVKVKKHLKNGKNVSMGFGFAEFDSMETATNVCRVLQGTVLDGHALILQLCQVKKDGDVRKTVEKDKSSTKLLVRNVAFEATEKDLRQLFTPFGQIKSLRLPMKFGNHRGFAFVEYVTQQEAQNALKALSSTHLYGRHLVIERAKEGESLEELRARTAAQFSDEQNGFQNATKKRKQVAILDERKMKFERFTD 861
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal9g0688 861 CDD RRM6_RBM19_RRM5_MRD1 738 812 - -
Lal9g0688 861 Gene3D - 232 413 IPR012677 -
Lal9g0688 861 Gene3D - 635 727 IPR012677 -
Lal9g0688 861 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 738 814 IPR000504 GO:0003723
Lal9g0688 861 MobiDBLite consensus disorder prediction 259 300 - -
Lal9g0688 861 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 4 73 IPR000504 GO:0003723
Lal9g0688 861 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 520 582 IPR000504 GO:0003723
Lal9g0688 861 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 740 807 IPR000504 GO:0003723
Lal9g0688 861 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 640 714 IPR000504 GO:0003723
Lal9g0688 861 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 325 395 IPR000504 GO:0003723
Lal9g0688 861 MobiDBLite consensus disorder prediction 88 107 - -
Lal9g0688 861 CDD RRM4_RBM19_RRM3_MRD1 518 589 - -
Lal9g0688 861 MobiDBLite consensus disorder prediction 407 433 - -
Lal9g0688 861 MobiDBLite consensus disorder prediction 401 433 - -
Lal9g0688 861 SMART rrm1_1 739 810 IPR000504 GO:0003723
Lal9g0688 861 SMART rrm1_1 3 76 IPR000504 GO:0003723
Lal9g0688 861 SMART rrm1_1 519 586 IPR000504 GO:0003723
Lal9g0688 861 SMART rrm1_1 639 717 IPR000504 GO:0003723
Lal9g0688 861 SMART rrm1_1 324 397 IPR000504 GO:0003723
Lal9g0688 861 MobiDBLite consensus disorder prediction 237 258 - -
Lal9g0688 861 MobiDBLite consensus disorder prediction 205 236 - -
Lal9g0688 861 SUPERFAMILY RNA-binding domain, RBD 620 724 IPR035979 GO:0003676
Lal9g0688 861 MobiDBLite consensus disorder prediction 190 204 - -
Lal9g0688 861 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 518 590 IPR000504 GO:0003723
Lal9g0688 861 PANTHER RNA-BINDING PROTEIN 19-RELATED 2 840 - -
Lal9g0688 861 SUPERFAMILY RNA-binding domain, RBD 734 816 IPR035979 GO:0003676
Lal9g0688 861 CDD RRM3_RBM19_RRM2_MRD1 324 397 - -
Lal9g0688 861 CDD RRM5_RBM19_like 638 719 IPR034423 -
Lal9g0688 861 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 2 80 IPR000504 GO:0003723
Lal9g0688 861 Gene3D - 511 611 IPR012677 -
Lal9g0688 861 Gene3D - 729 840 IPR012677 -
Lal9g0688 861 CDD RRM1_MRD1 2 78 - -
Lal9g0688 861 SUPERFAMILY RNA-binding domain, RBD 312 410 IPR035979 GO:0003676
Lal9g0688 861 PANTHER SERINE/ARGININE RICH SPLICING FACTOR 2 840 - -
Lal9g0688 861 SUPERFAMILY RNA-binding domain, RBD 3 88 IPR035979 GO:0003676
Lal9g0688 861 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 323 401 IPR000504 GO:0003723
Lal9g0688 861 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 638 721 IPR000504 GO:0003723
Lal9g0688 861 SMART rrm2_1 639 717 IPR003954 GO:0003676
Lal9g0688 861 SMART rrm2_1 324 397 IPR003954 GO:0003676
Lal9g0688 861 SMART rrm2_1 3 76 IPR003954 GO:0003676
Lal9g0688 861 SUPERFAMILY RNA-binding domain, RBD 515 603 IPR035979 GO:0003676
Lal9g0688 861 MobiDBLite consensus disorder prediction 190 318 - -
Lal9g0688 861 Gene3D - 1 130 IPR012677 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal9g0688 Lal-Chr9 4760456 4767007 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal9g0688 631 830 Eukaryotic Initiation Factors Gene Family AT1G49760 29.108 1.54e-11 66.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal9g0688 K14787 - gmx:100796243 1169.84