Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal9g0687 ATGACAGATCCTAATTCCAAATTATTCGATGGATGGCTCAACTACTCTTATGATTCTCATGATCAATCCAAATACTTGTTCCAATCTTCTTCATTATACCCTCTTGTTTACTCATCAAACAACAGATTTGGAATTCCTTCAGAAGCTTCGTCCTCCAATAGTATTATTGCATGTCCTCCTTCCCCTCCTCTCATAGAGGCACTTCCTCTCTTGAACAAATTAAGCCTCACAAATCAACACCACCAAAACGTTGAACCTTCAAACCTTAATAGTGCTTTACAAGAGAGCAAAGATGTTGAGAGTATTGTCACTGGTACTGAATATGATGAAGATGATGGAGCAGCTGTTACAGTTTCCCTTAAAATAGGGCTTCCAAGAATGGATACTGTTTCTTCTGATCTGGGGTCAAGAAAGGTCTCAACTTGTGTAGAAAAAGAAAGAGTGAATATGATTTCTGTGCACCCTTTTGATGGATTGAACAAGGGCCAGTATTGGATTCCCACCCCTTCTCAGATTCTTATTGGTCCTACACAGTTCTCATGTCATGTCTGCTCTAAAACTTTCAACAGATACAACAATCTTCAGATGCATATGTGGGGACACGGATCTCAATACAGAAAGGGTTCTGATTCTCTAAAAGGAACACAGCCAACAGCTATGTTAAGGCTACCATGCTTTTGTTGTGCACAAGATTGCAAGCACAACATTGACCACCCAAGAGCAAAGCCTCTCAAGGATTTTAGAACCCTTCAAACTCACTATAAGAGAAAGCATGGAGTAAAACCCTATATGTGCAGAAAATGTGGCAAAACATTTGCAGTAAAAGGTGATTGGAGGACACATGAGAAGAACTGTGGCAAAATTTGGTATTGTTTATGTGGGTCTGATTTCAAACACAAAAGGTCTCTAAAAGACCACATCAAAGCGTTTGGCTTTGGCCATGGAGTTTTTGGTATGGATTGCTTGCAAGAAGAAGATGAAGCAGCTTCTGAGATTGAACATGATGAAGAGGCCTCAATGTGA 1023 0.3998 MTDPNSKLFDGWLNYSYDSHDQSKYLFQSSSLYPLVYSSNNRFGIPSEASSSNSIIACPPSPPLIEALPLLNKLSLTNQHHQNVEPSNLNSALQESKDVESIVTGTEYDEDDGAAVTVSLKIGLPRMDTVSSDLGSRKVSTCVEKERVNMISVHPFDGLNKGQYWIPTPSQILIGPTQFSCHVCSKTFNRYNNLQMHMWGHGSQYRKGSDSLKGTQPTAMLRLPCFCCAQDCKHNIDHPRAKPLKDFRTLQTHYKRKHGVKPYMCRKCGKTFAVKGDWRTHEKNCGKIWYCLCGSDFKHKRSLKDHIKAFGFGHGVFGMDCLQEEDEAASEIEHDEEASM 340
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal9g0687 340 PANTHER ZINC FINGER PROTEIN WIP2 1 338 IPR043584 GO:0003700|GO:0010468
Lal9g0687 340 ProSitePatterns Zinc finger C2H2 type domain signature. 181 201 IPR013087 -
Lal9g0687 340 Gene3D Classic Zinc Finger 178 201 - -
Lal9g0687 340 SMART c2h2final6 263 283 IPR013087 -
Lal9g0687 340 SMART c2h2final6 179 201 IPR013087 -
Lal9g0687 340 Pfam Zinc finger, C2H2 type 179 198 IPR013087 -
Lal9g0687 340 ProSiteProfiles Zinc finger C2H2 type domain profile. 263 283 IPR013087 -
Lal9g0687 340 Gene3D Classic Zinc Finger 241 311 - -
Lal9g0687 340 PANTHER TESTA 1 PROTEIN, PUTATIVE-RELATED 1 338 - -
Lal9g0687 340 ProSiteProfiles Zinc finger C2H2 type domain profile. 179 206 IPR013087 -
Lal9g0687 340 SUPERFAMILY beta-beta-alpha zinc fingers 179 283 IPR036236 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal9g0687 Lal-Chr9 4756596 4759552 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal9g0687 159 333 C2H2 Transcription Factor Family AT3G57670 84.571 2.61e-115 337
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Lal9g0687 zf-C2H2_6 0.00017 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal9g0687 - - gmx:100794446 496.123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal9g0687 9 4756596 4759552 Lal9g0687 9 4756596 4759552 ECH