Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal9g0645 ATGGCTGATCCAAGGTTTGTTGTTCCATATCGTGACCCCTATGATACTCCACTTAGCCCAAGCATTTTCAACTTGACAAACCCCACAATATCTGATTTATCAAACATTGTTAACAATAACTATAATGGACTCCTTCCACTACCGCAACAAATTGAATATGGACATGGAAATGAAGTTCAAGGGGTTAATCATCCATTACTTGACCCAATGATGAGTACTTATTATTTTCCCAATGGAGGAAATGACAGCAGCAACAACAACAACAACTTTGAATCACAAGTGAATAATGTGGGTCCAAGTCAGCCACCAAATTGGAACTTCTTTGGGTCACAGAATTTTAGCAACATGGAAGTGATGCCACTTCCTTGTTGGCCAGAATCACCAGCCCCTTTTAGTTGCTCTTGCTGTCAAGTTTTGAGAGAGATAATTCACACCAATGGTTTTACCTTCAACAAACTTGAGATTCATGGAAGGCTTGGGATAATGTGTCATGCAATTCATCACCAGAATATCAATGGGAATATCAATGGGGCTTCTTCAAGTAACCCTCAATTTCAAATGATTGATTTTAACATGAAAAACATTCAAGAAATCAAGAATTTTCTAGTGCAATACTGTCTGGGGCAAAATACATCAGGCTACGTTATGGTGCAAGATCCATTGTCTCCCTATTATGAAGCCCTCTGCATTGGACTAGACTGGGCTGAAGACTTAAATGACTATATCGACATGAATCCAAATGGTTCAGGAGGACCGTCCGATGAAATGGAACAAGAGGTTGACAATGGAAGAGCTCGTAGGCCTAGCCTTTCAGAACAGAAAGAGAGAATAGCTAAAATGAAATTAAGTGATGTAAGCGATTACTTTCATCTACCTATTGAGGAAGCAGCAAAGAAGTTGAACGTATGTTCTAGTGTCGTGAAGGGAGTTTGTCGTAGAGAAGGAGTAAAAAGATGGCCTCAAAGAAAGATCACAAGCATTGTGAAGCAGATCACAGTGCTGAAAAGAACTTTAAATTCAGCAGATGCAAGTACAAGGGCAAGAACTGAGGCAGAAATTAACAAACTTGAAGAAGAAATGAAGGGGCTTTGTGGTGGAATTTCCCCAACCGCAATAAATTACTCATGA 1128 0.3963 MADPRFVVPYRDPYDTPLSPSIFNLTNPTISDLSNIVNNNYNGLLPLPQQIEYGHGNEVQGVNHPLLDPMMSTYYFPNGGNDSSNNNNNFESQVNNVGPSQPPNWNFFGSQNFSNMEVMPLPCWPESPAPFSCSCCQVLREIIHTNGFTFNKLEIHGRLGIMCHAIHHQNINGNINGASSSNPQFQMIDFNMKNIQEIKNFLVQYCLGQNTSGYVMVQDPLSPYYEALCIGLDWAEDLNDYIDMNPNGSGGPSDEMEQEVDNGRARRPSLSEQKERIAKMKLSDVSDYFHLPIEEAAKKLNVCSSVVKGVCRREGVKRWPQRKITSIVKQITVLKRTLNSADASTRARTEAEINKLEEEMKGLCGGISPTAINYS 375
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal9g0645 375 MobiDBLite consensus disorder prediction 257 273 - -
Lal9g0645 375 PANTHER RWP-RK DOMAIN PROTEIN 6 366 - -
Lal9g0645 375 MobiDBLite consensus disorder prediction 245 273 - -
Lal9g0645 375 MobiDBLite consensus disorder prediction 77 96 - -
Lal9g0645 375 Coils Coil 339 366 - -
Lal9g0645 375 Pfam RWP-RK domain 280 327 IPR003035 -
Lal9g0645 375 ProSiteProfiles RWP-RK domain profile. 261 347 IPR003035 -
Lal9g0645 375 PANTHER PROTEIN RKD4 6 366 IPR044607 GO:0003700
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal9g0645 Lal-Chr9 4453836 4455856 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal9g0645 285 363 AtRKD Transcription Factor Family AT1G18790 35.443 2.33e-10 58.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF RWP-RK Lal9g0645 RWP-RK 7e-20 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal9g0645 - - lang:109354161 693.73