Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal9g0551 ATGTCTCTTAGGAGGATTTTCCGTTCTCGCAAATTCTCCAGATCCTTCAAGGAATTCGGAACCACCTCCGACGGTGTCGACCGCCGAAACGGAATCAATTCCGGCGAGGAGGATGGATCGCCGGAACAAGGCAATGCATGGTCGATGATGCTGCCGGAGATTCTAGGGGAGATTATACGGCGAGTGGAGGCTGATGAGAAACAGTGGCCGCAGCGTCAAAACGTCGTCGCTTGCGCATGCGTGTGTAAGAGGTGGAGGGATATCACACGAGAGATCATTAGAGCGATTCCTCAAACTGGGAAAATCACTTTTCCTTCTTGTCTCAAACAGCCAGGACCAAGCAACCTTCCCCAGCAATGTGTTATAAAGCGTAACAAGAAGACCTCAACATTTTACCTATATCTTGCCCTTACACCATCATTCACAGAGAAAGGGAAGTTTCTCTTAGCAGCTAGAAGATTTAGGCATGGTGCCCATACAGAGTATATAATGTCACTTGATGCAGATGACTTGTCCCAAGGAAGCAATGCTTATGTTGGAAAGTTAAGCTCAGATTTTCTTGGCACCAACTTCACAGTATATGACAGCCAGCCACCTCATAGAAGTGCAAAACCATCAAACAGCAGGGTCCGCCGTCGTTTTGCCAGCAAGCAGATAAGCCCTCAAGTTCCTGCAGGCAACTTTGAGGTGGGGCATGTGTCCTACAAGTTCAACCTTTTGAAATCAAGAGGGCCAAGGAGGATGGTTTGCTCACTGATTAGTCCCGTCACATCATCAGAAGACAGTTCAGATAGCAAAAATCTGGAGATGAACTGTAAAGATCATTTTGCTCCTGGCTCCTTAATCTTGAAGAACAAAGCTCCAAGATGGCATGAGCATTTGCAGTGCTGGTGTTTGAATTTCCATGGTCGTGTAACTGTAGCGTCAGTGAAGAACTTTCAGCTGGTCGCTACTGTGGACCGGAGTAAACCAGACGGGAAAGGCGATGAAGAAACCGTGCTCCTTCAGTTTGGGAAGGTCGGGGATGATACATTTACCATGGATTATAGGCAGCCCTTATCTGCCTTCCAGGCATTTGCCATTTGCTTGACTAGCTTTGGCACTAAGTTGGCATGTGAGTAA 1122 0.4733 MSLRRIFRSRKFSRSFKEFGTTSDGVDRRNGINSGEEDGSPEQGNAWSMMLPEILGEIIRRVEADEKQWPQRQNVVACACVCKRWRDITREIIRAIPQTGKITFPSCLKQPGPSNLPQQCVIKRNKKTSTFYLYLALTPSFTEKGKFLLAARRFRHGAHTEYIMSLDADDLSQGSNAYVGKLSSDFLGTNFTVYDSQPPHRSAKPSNSRVRRRFASKQISPQVPAGNFEVGHVSYKFNLLKSRGPRRMVCSLISPVTSSEDSSDSKNLEMNCKDHFAPGSLILKNKAPRWHEHLQCWCLNFHGRVTVASVKNFQLVATVDRSKPDGKGDEETVLLQFGKVGDDTFTMDYRQPLSAFQAFAICLTSFGTKLACE 373
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal9g0551 373 SUPERFAMILY Tubby C-terminal domain-like 98 373 IPR025659 -
Lal9g0551 373 PRINTS Tubby superfamily signature 162 178 IPR000007 -
Lal9g0551 373 PRINTS Tubby superfamily signature 178 202 IPR000007 -
Lal9g0551 373 PRINTS Tubby superfamily signature 227 254 IPR000007 -
Lal9g0551 373 PRINTS Tubby superfamily signature 283 300 IPR000007 -
Lal9g0551 373 PRINTS Tubby superfamily signature 301 317 IPR000007 -
Lal9g0551 373 PRINTS Tubby superfamily signature 330 349 IPR000007 -
Lal9g0551 373 PRINTS Tubby superfamily signature 351 373 IPR000007 -
Lal9g0551 373 Pfam F-box domain 52 92 IPR001810 GO:0005515
Lal9g0551 373 ProSitePatterns Tub family signature 2. 358 373 IPR018066 -
Lal9g0551 373 Gene3D Tubby Protein; Chain A 103 373 IPR025659 -
Lal9g0551 373 PANTHER TUBBY-RELATED 1 373 - -
Lal9g0551 373 PANTHER TUBBY-LIKE F-BOX PROTEIN 7 1 373 - -
Lal9g0551 373 ProSitePatterns Tub family signature 1. 301 314 IPR018066 -
Lal9g0551 373 MobiDBLite consensus disorder prediction 19 35 - -
Lal9g0551 373 MobiDBLite consensus disorder prediction 19 46 - -
Lal9g0551 373 Pfam Tub family 108 368 IPR000007 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal9g0551 Lal-Chr9 3738962 3743151 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal9g0551 1 373 TUB Transcription Factor Family AT1G53320 70.757 0.0 531
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TUB Lal9g0551 Tub 3.3e-99 CL0395
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal9g0551 K19600 - gmx:100808096 580.096
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal9g0551 9 3738962 3743151 Lal9g0551 9 3738962 3743151 ECH