Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal9g0546 ATGTCAAATTCTGATAAACCCATTCCCGAGTTAGGGCACGGGTCACTTAGTAACCGTTTCCGTAACTCACTGAGTTGTGAAGACAATAAACCCGATTCCCGACAACTCGGTCTGGATTCACCCATTTCGCCATTGCGGACTCGCCACCATCGTAGTGCAACAGCAACCGCCACCAGTAGTAGTAGTAGTTCCGGTTCATCCGGTTCGGTGTCTGGCCGAACCGGTCTAAATCCGGTTTCCAAGAGATCCAATTCCGTCGACCTTTCCGGTTCTAGTGAGTACAATAGCCCCACCGCTGCCGCCGGGAATGTTCCACGGAGCTTCAAATCGGGTTCGAGTTCATCGCAGCCGTTGATTTATTCCGGTCAGTCCCATAGATCTCCGGCATTGTCTTCCTCCACCGTTAATTCGCCGCCGCCGAATGTACTCCCCGCCGGAAACATTTGCCCCTCCGGCAGAGTTCCTAAATCCAGCATGGCATCGGCTAGCCGGAGCTCCAGGCATGATGTTTTGGGCACCGGCATGGGAAATTACGGCCATGGGAGCATAATGCGGGGTGGGGGCGGTGGCAGAAGTGGCAGTGGAGATGGCGTTGCGAATGCCAGAGTGAGCGGTAGTAGTGAATCAGTGAAGAGTGGAGTGGGGAGTGTGGATCCAGAAGAAGTGAAGAGAGCAGGGAATGAACAATATAAGAGGGGCCACTTTGCTGAAGCATTGAGTTTATATGATCGGGCAATTGAATTGTCTCCGGATAATGCCGCTTATTGGAGCAACCGGGCCGCAGCATTGACTGGTTTAGGAAGATTGGGAGAGGCAGTGAAGGATTGTGAGGAGGCTGTGAGGTTGGATCCTAATTACGGAAGGGCACATCACCGTTTGGCAACTCTTTTTCTAAGGTTAGGACAAGTAGAGAATGCTAGGAAGCACTTCTTTTATCCTGGGCTGCAGCCGGATCCTTCTGAGGTTCAGAAGTTGCAAATAGTGGAAAAGCATATCAGCAAATGTGTAGATATGCGGAGGATAGGAGAATGGAAAAGTGTTATCAGGGAAGTTGATGCTGCTATTGCTACTGGAGTAGACTTTTCTGTTCAGTTATTCATGTGTAGAGCAGAAGCCCTTTTGAAGCTCCACCAAATTGATGATGCTGAATCAAGTTTATTACGTATTCCCAAATGGGAATCACATACCATTTCCATGTCGCAGGCAAGATTTTTTGGGATGCTTTCCGAAGCTTATTGCTACTTTGTTAGAGCACAGATTGATATGGCTTTTGGAAGGTTTGAGAATGCAGTTACAGCTGCTGAGAAAGCTATTCAGATTGATCAGCGAAATGTTGAAGTTGCTGTTTTGCTCAACAATGTAAGGATGGTGGCCAGAGCTCGAGTGCGTGGCAATGATCTTTTCAAATCAGAAAGATTCACCGAGGCATGCTCTGCATACGGGGAAGGTTTGAGACTGGACCCGTCAAACTCTGTTCTCTATTGCAACAGAGGAGCATGTTGGTATAAGCTTGGGCAATGGGAAAGATCAATTGAAGACTCCAATCAAGCTTTACGAGTCCAACCAAATTACAAAAAGGCACTTCTTCGAAGAGCTGCATCAAATAGCAAGCTAGAACGGTGGGAAGAAGCAGTAAAAGATTACGAGGTCTTGCAGAGAGAACTTCCTGATGATAATGAAATTGCTGAAGCCTTATTTCATGCACGCCTTGCACTAAAGAATTTTCGTGGGGAAGAAGTACACAATTTAAAATTTGGTGGTGAAGTAGAGGCCATATCAGATCTCGATCAGTTTAGAGCTGCAATATCTTTACCAGGTGTTTCTGTTGTCCATTTTGAAATTGCATCAAACTTACAATGCAAGCAAATATCACCATTTGTGGATACACTATGCAGTCGCTATCCATCTATTAACTTCCTCAGGGTGGATATTCAAGAAAACCCAACAGTTGCAACTTCAGAGAATGTTAGGATTGTACCAACCTTCAAGATCTACAAAAACGGCAGCCGAGCTAAGGAAATCGTATGCCCTAGCCGTGATATGTTGGAACAATCCATTAAGCACTACAGCATTTACAACTCATGA 2085 0.4638 MSNSDKPIPELGHGSLSNRFRNSLSCEDNKPDSRQLGLDSPISPLRTRHHRSATATATSSSSSSGSSGSVSGRTGLNPVSKRSNSVDLSGSSEYNSPTAAAGNVPRSFKSGSSSSQPLIYSGQSHRSPALSSSTVNSPPPNVLPAGNICPSGRVPKSSMASASRSSRHDVLGTGMGNYGHGSIMRGGGGGRSGSGDGVANARVSGSSESVKSGVGSVDPEEVKRAGNEQYKRGHFAEALSLYDRAIELSPDNAAYWSNRAAALTGLGRLGEAVKDCEEAVRLDPNYGRAHHRLATLFLRLGQVENARKHFFYPGLQPDPSEVQKLQIVEKHISKCVDMRRIGEWKSVIREVDAAIATGVDFSVQLFMCRAEALLKLHQIDDAESSLLRIPKWESHTISMSQARFFGMLSEAYCYFVRAQIDMAFGRFENAVTAAEKAIQIDQRNVEVAVLLNNVRMVARARVRGNDLFKSERFTEACSAYGEGLRLDPSNSVLYCNRGACWYKLGQWERSIEDSNQALRVQPNYKKALLRRAASNSKLERWEEAVKDYEVLQRELPDDNEIAEALFHARLALKNFRGEEVHNLKFGGEVEAISDLDQFRAAISLPGVSVVHFEIASNLQCKQISPFVDTLCSRYPSINFLRVDIQENPTVATSENVRIVPTFKIYKNGSRAKEIVCPSRDMLEQSIKHYSIYNS 694
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal9g0546 694 ProSiteProfiles TPR repeat profile. 219 252 IPR019734 GO:0005515
Lal9g0546 694 MobiDBLite consensus disorder prediction 47 141 - -
Lal9g0546 694 SMART tpr_5 253 286 IPR019734 GO:0005515
Lal9g0546 694 SMART tpr_5 491 524 IPR019734 GO:0005515
Lal9g0546 694 SMART tpr_5 219 252 IPR019734 GO:0005515
Lal9g0546 694 SMART tpr_5 457 490 IPR019734 GO:0005515
Lal9g0546 694 SMART tpr_5 525 558 IPR019734 GO:0005515
Lal9g0546 694 SMART tpr_5 411 444 IPR019734 GO:0005515
Lal9g0546 694 Pfam Tetratricopeptide repeat 413 443 IPR019734 GO:0005515
Lal9g0546 694 Pfam Tetratricopeptide repeat 225 285 - -
Lal9g0546 694 Pfam Tetratricopeptide repeat 502 558 - -
Lal9g0546 694 PANTHER TPR REPEAT-CONTAINING THIOREDOXIN 13 689 IPR044534 -
Lal9g0546 694 MobiDBLite consensus disorder prediction 1 225 - -
Lal9g0546 694 MobiDBLite consensus disorder prediction 199 213 - -
Lal9g0546 694 ProSiteProfiles TPR repeat profile. 253 286 IPR019734 GO:0005515
Lal9g0546 694 CDD TRX_family 596 687 - -
Lal9g0546 694 SUPERFAMILY TPR-like 219 446 IPR011990 GO:0005515
Lal9g0546 694 PANTHER TPR REPEAT-CONTAINING THIOREDOXIN TTL1 13 689 - -
Lal9g0546 694 MobiDBLite consensus disorder prediction 154 170 - -
Lal9g0546 694 Gene3D Glutaredoxin 583 691 - -
Lal9g0546 694 ProSiteProfiles TPR repeat profile. 491 524 IPR019734 GO:0005515
Lal9g0546 694 Gene3D Tetratricopeptide repeat domain 217 576 IPR011990 GO:0005515
Lal9g0546 694 SUPERFAMILY Thioredoxin-like 494 691 IPR036249 -
Lal9g0546 694 Pfam Thioredoxin 607 687 IPR013766 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal9g0546 Lal-Chr9 3691734 3695475 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal9g0546 456 527 U-box Gene Family AT3G07370 36.111 6.74e-07 49.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal9g0546 - - adu:107459775 938.717
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal9g0546 9 3691734 3695475 Lal9g0546 9 3691734 3695475 ECH
Lal1g0598 1 3831347 3835015 Lal9g0546 9 3691734 3695475 LSH
Lal20g0371 20 2977423 2982496 Lal9g0546 9 3691734 3695475 PCT
Lal11g1461 11 17911908 17915954 Lal9g0546 9 3691734 3695475 PCT
Lal1g1620 1 18612298 18616289 Lal9g0546 9 3691734 3695475 PCT
Lal9g0546 9 3691734 3695475 Lal10g0665 10 14463973 14467528 PCT
Lal9g0546 9 3691734 3695475 Lal8g0739 8 5275874 5279357 PCT